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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
18
chromatin state
16
target gene predictions
3
histone modifications
2
accessible chromatin
2
eQTL
1
binding sites
1
gene expression
1
variant allelic effects
Annotation Category
3
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
RNA-seq
Available data
3
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
25
retina
24
fibroblast
23
macrophage
22
monocyte
21
islet of Langerhans
20
pigmented layer of retina
19
endothelial cell
13
excitatory neuron
12
kidney
12
smooth muscle cell
11
T cell
11
liver
10
hepatocyte
10
neural progenitor cell
10
pericyte cell
9
EndoC_BH1
9
pancreatic ductal cell
9
retinal pigment epithelial cell
9
subcutaneous adipose tissue
8
B cell
8
astrocyte
8
pancreatic acinar cell
8
pancreatic beta cell
7
adipocyte
7
adipose tissue
7
coronary artery
7
heart
7
lymphoblastoid cell line
7
pancreas
7
pancreatic alpha cell
7
regulatory T cell
7
right atrium auricular region
7
skeletal muscle fiber
7
tibial artery
7
tibial nerve
6
SGBS preadipocytes
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
glutamatergic neuron
6
heart left ventricle
6
putamen
5
cardiac fibroblast
5
CD8-positive, alpha-beta T cell
5
brain
5
caudate nucleus
5
chondrocyte
5
erythroblast
5
frontal cortex
5
inhibitory neuron
5
natural killer cell
5
osteoblast
5
pancreatic delta cell
5
skeletal muscle satellite cell
5
type II pneumocyte
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
T-helper 1 cell
4
basal cell
4
cardiac muscle cell
4
cortical cell of adrenal gland
4
fibroblast of cardiac tissue
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
memory B cell
4
mesenchymal stem cell
4
myofibroblast cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
omental fat pad
4
pancreatic stellate cell
4
stomach
4
type I muscle cell
4
type II muscle cell
3
Ammon's horn
3
Schwann cell
3
T follicular helper cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
blood cell
3
brain pericyte
3
cerebellum
3
choroid plexus epithelial cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
goblet cell
3
keratinocyte
3
kidney glomerular epithelial cell
3
mammary gland epithelial cell
3
medulla oblongata
3
mesothelial cell
3
midbrain
3
naive B cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
occipital lobe
3
pancreatic polypeptide-secreting cell
3
pons
3
renal cortical epithelial cell
3
renal pelvis
3
skeletal muscle myoblast
3
skin fibroblast
3
skin of body
3
spinal cord
3
spleen
3
substantia nigra
3
superior temporal gyrus
3
type I pneumocyte
2
hindlimb muscle
2
muscle of leg
2
CD4-positive helper T cell
2
HepG2
2
MIN6
2
Muller cell
2
Rh-4 cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
amygdala
2
anterior cingulate cortex
2
aortic endothelial cell
2
articular chondrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood
2
blood vessel smooth muscle cell
2
body of pancreas
2
bone marrow cell
2
capillary endothelial cell
2
cartilage tissue
2
central memory CD8-positive, alpha-beta T cell
2
cerebellum (Hemisphere)
2
ciliated cell
2
club cell
2
cortex of kidney
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroid cell
2
esophagus muscularis mucosa
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
heart right ventricle
2
hypothalamus
2
iPSC derived cell line
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mast cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
microglial cell
2
middle frontal gyrus
2
muscle
2
muscle of arm
2
muscle of leg
2
naive regulatory T cell
2
naive t cell
2
neuron
2
neutrophil
2
nucleus accumbens
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
ovary
2
parietal cell
2
peptic cell
2
placenta
2
plasma cell
2
plasmacytoid dendritic cell
2
prostate gland
2
renal cortex interstitium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
schwann cell
2
skeletal muscle cell
2
skeletal muscle tissue
2
small intestine
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
Organ
5
brain
Life stage
1
fetal
Date released
2
January, 2022
1
January, 2020
1
June, 2020
1
May, 2020
Software used
2
macs
2
qTLtools
1
deltasvm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
bed gappedPeak
organ_slims!
lymphoid tissue
Showing 5 of 5 results
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Download
FileSet
DSR191XXQ
released
Annotation file set
: brain naive eQTL of studay ROSMAP from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR999BSN
released
Annotation file set
: brain eQTL of studay BrainSeq from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR147QJJ
released
Annotation file set
: Accessible chromatin annotation for Neural Fetal brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR154FEP
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP