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Schema
Citing CMDGA
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Annotation type
10
gene expression
6
target gene predictions
2
accessible chromatin
2
binding sites
1
eQTL
1
histone modifications
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
snATAC-seq
1
ATAC-seq
1
RNA-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
24
retina
21
monocyte
20
pigmented layer of retina
19
islet of Langerhans
11
kidney
11
liver
10
neural progenitor cell
8
EndoC_BH1
8
macrophage
8
retinal pigment epithelial cell
8
subcutaneous adipose tissue
7
hepatocyte
7
lymphoblastoid cell line
6
SGBS preadipocytes
adipose tissue
6
embryonic stem cell
6
pancreas
6
regulatory T cell
5
chondrocyte
5
coronary artery
5
heart
5
osteoblast
5
putamen
5
right atrium auricular region
5
tibial artery
5
tibial nerve
4
B cell
4
T-helper 1 cell
4
adipocyte
4
brain
4
caudate nucleus
4
endothelial cell of hepatic sinusoid
4
frontal cortex
4
glutamatergic neuron
4
heart left ventricle
4
omental fat pad
4
pancreatic ductal cell
4
stomach
3
cardiac fibroblast
3
Ammon's horn
3
CD8-positive, alpha-beta T cell
3
T cell
3
T follicular helper cell
3
T-helper 17 cell
3
T-helper 2 cell
3
blood cell
3
cerebellum
3
endothelial cell
3
glomerular visceral epithelial cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
skin of body
3
spinal cord
3
spleen
3
substantia nigra
2
CD4-positive helper T cell
2
HepG2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
amygdala
2
anterior cingulate cortex
2
aortic endothelial cell
2
articular chondrocyte
2
ascending aorta
2
blood
2
bone marrow cell
2
brain pericyte
2
cardiac muscle cell
2
cartilage tissue
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
cortex of kidney
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
erythroid cell
2
esophagus muscularis mucosa
2
fibroblast
2
fibroblast of cardiac tissue
2
gamma-delta T cell
2
globus pallidus
2
glomerular endothelial cell
2
hepatic stellate cell
2
hypothalamus
2
iPSC derived cell line
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
mature natural killer cell
2
medulla oblongata
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
midbrain
2
muscle
2
muscle of leg
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
neutrophil
2
nucleus accumbens
2
occipital lobe
2
ovary
2
pancreatic acinar cell
2
pancreatic beta cell
2
pancreatic stellate cell
2
placenta
2
pons
2
prostate gland
2
renal cortical epithelial cell
2
renal pelvis
2
skeletal muscle myoblast
2
skeletal muscle tissue
2
skin fibroblast
2
small intestine
2
superior temporal gyrus
2
testis
2
thyroid gland
2
transverse colon
2
uterus
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
C1 segment of cervical spinal cord
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
Organ
3
epithelium
Life stage
1
adult
Date released
2
February, 2024
1
August, 2021
Software used
2
macs
1
qTLtools
Lab
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP2
1
AMP
annotation_type_category!
snATAC-seq
biosample_term_name!
adipose tissue
effector memory CD8-positive, alpha-beta T cell
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP