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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
26
target gene predictions
12
candidate regulatory elements
10
chromatin state
7
gene expression
3
accessible chromatin
2
binding sites
1
eQTL
1
histone modifications
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
ATAC-seq
1
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
retina
22
monocyte
20
islet of Langerhans
20
macrophage
20
pigmented layer of retina
18
fibroblast
17
endothelial cell
13
excitatory neuron
11
kidney
11
liver
10
neural progenitor cell
10
pericyte cell
10
smooth muscle cell
T cell
9
retinal pigment epithelial cell
8
B cell
8
EndoC_BH1
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
8
subcutaneous adipose tissue
7
lymphoblastoid cell line
7
pancreatic acinar cell
7
pancreatic alpha cell
7
regulatory T cell
6
SGBS preadipocytes
6
adipocyte
6
adipose tissue
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
pancreas
5
CD8-positive, alpha-beta T cell
5
chondrocyte
5
coronary artery
5
erythroblast
5
heart
5
inhibitory neuron
5
natural killer cell
5
osteoblast
5
pancreatic delta cell
5
putamen
5
right atrium auricular region
5
skeletal muscle fiber
5
skeletal muscle satellite cell
5
tibial artery
5
tibial nerve
4
T-helper 1 cell
4
brain
4
caudate nucleus
4
fibroblast of cardiac tissue
4
frontal cortex
4
heart left ventricle
4
memory B cell
4
mesenchymal stem cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
omental fat pad
4
pancreatic stellate cell
4
stomach
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
cardiac fibroblast
3
Ammon's horn
3
T follicular helper cell
3
T-helper 17 cell
3
T-helper 2 cell
3
blood cell
3
cerebellum
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
naive B cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
skin fibroblast
3
skin of body
3
spinal cord
3
spleen
3
substantia nigra
3
type I pneumocyte
2
CD4-positive helper T cell
2
HepG2
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
amygdala
2
anterior cingulate cortex
2
aortic endothelial cell
2
articular chondrocyte
2
ascending aorta
2
basal cell
2
blood
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
cartilage tissue
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
cortex of kidney
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
esophagus muscularis mucosa
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
hypothalamus
2
iPSC derived cell line
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesothelial cell
2
microglial cell
2
midbrain
2
muscle
2
muscle of leg
2
naive regulatory T cell
2
neuron
2
neutrophil
2
nucleus accumbens
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
ovary
2
pancreatic polypeptide-secreting cell
2
placenta
2
plasma cell
2
plasmacytoid dendritic cell
2
pons
2
prostate gland
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
skeletal muscle myoblast
2
skeletal muscle tissue
2
small intestine
2
smooth muscle cell of the esophagus
2
superior temporal gyrus
2
testis
2
thyroid gland
2
transverse colon
2
uterus
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
C1 segment of cervical spinal cord
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
Organ
1
blood
1
bodily fluid
Date released
2
May, 2020
1
January, 2022
1
June, 2020
Software used
1
macs
1
qTLtools
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
T cell
retina
Showing 4 of 4 results
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Download
FileSet
DSR742CPO
released
Annotation file set
: Th17 memory eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR191JBF
released
Annotation file set
: Accessible chromatin annotation for Blood K-562 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR623HXM
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal T-helper 17 cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR976ETR
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated T-helper 17 cell
Lab:
AMP-T2D consortium
Project:
AMP