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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
41
candidate regulatory elements
22
target gene predictions
20
chromatin state
4
accessible chromatin
2
binding sites
2
histone modifications
1
eQTL
1
gene expression
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
tissue
1
cell line
Biosample term
23
retina
22
monocyte
20
islet of Langerhans
20
macrophage
18
fibroblast
13
excitatory neuron
11
liver
10
neural progenitor cell
10
pericyte cell
10
smooth muscle cell
9
T cell
9
kidney
8
B cell
8
astrocyte
7
lymphoblastoid cell line
7
regulatory T cell
7
subcutaneous adipose tissue
6
adipocyte
6
embryonic stem cell
6
glutamatergic neuron
5
CD8-positive, alpha-beta T cell
5
adipose tissue
5
chondrocyte
5
erythroblast
5
inhibitory neuron
5
natural killer cell
5
osteoblast
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
SGBS preadipocytes
4
T-helper 1 cell
4
coronary artery
4
fibroblast of cardiac tissue
4
memory B cell
4
mesenchymal stem cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
pancreas
4
pancreatic stellate cell
4
putamen
4
right atrium auricular region
4
stomach
4
tibial artery
4
tibial nerve
4
type I muscle cell
4
type II muscle cell
3
T follicular helper cell
3
T-helper 17 cell
3
T-helper 2 cell
3
blood cell
3
brain
3
caudate nucleus
3
frontal cortex
3
gabaergic neuron
3
heart
3
naive B cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
omental fat pad
3
skin fibroblast
3
skin of body
3
spinal cord
3
spleen
3
substantia nigra
2
Ammon's horn
2
CD4-positive helper T cell
2
HepG2
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
basal cell
2
blood
2
blood vessel smooth muscle cell
2
bone marrow cell
2
cartilage tissue
2
central memory CD8-positive, alpha-beta T cell
2
cerebellum
2
ciliated cell
2
cortex of kidney
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
esophagus muscularis mucosa
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
heart left ventricle
2
hepatic stellate cell
2
hypothalamus
2
iPSC derived cell line
2
leukocyte
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
microglial cell
2
midbrain
2
muscle
2
naive regulatory T cell
2
neuron
2
neutrophil
2
nucleus accumbens
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
ovary
2
placenta
2
plasma cell
2
plasmacytoid dendritic cell
2
prostate gland
2
schwann cell
2
skeletal muscle myoblast
2
skeletal muscle tissue
2
small intestine
2
smooth muscle cell of the esophagus
2
testis
2
thyroid gland
2
transverse colon
2
uterus
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
C1 segment of cervical spinal cord
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
Organ
4
stomach
1
gonad
1
testis
Date released
4
June, 2020
1
January, 2022
Software used
4
macs
1
qTLtools
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
January, 2020
organ_slims!
epithelium
Showing 5 of 5 results
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Download
FileSet
DSR542EVP
released
Annotation file set
: stomach eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815ZSB
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell NT2-D1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355FEE
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Stomach from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR769DZK
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Gastric primary sample from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR936OND
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Fetal stomach from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP