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Schema
Citing CMDGA
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Annotation type
29
candidate regulatory elements
15
chromatin state
14
target gene predictions
7
gene expression
2
histone modifications
1
accessible chromatin
1
binding sites
1
eQTL
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
DNase-seq
1
RNA-seq
Available data
11
bed bed3+
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
15
islet of Langerhans
10
neural progenitor cell
9
liver
9
macrophage
8
retina
7
EndoC_BH1
7
lymphoblastoid cell line
7
pigmented layer of retina
6
embryonic stem cell
6
monocyte
6
subcutaneous adipose tissue
5
adipose tissue
5
chondrocyte
5
retinal pigment epithelial cell
4
SGBS preadipocytes
4
T cell
4
adipocyte
4
endothelial cell of hepatic sinusoid
4
fibroblast
4
glutamatergic neuron
4
putamen
4
regulatory T cell
4
stomach
3
blood cell
3
brain
3
caudate nucleus
3
endothelial cell
3
frontal cortex
3
mesenchymal stem cell
3
pancreas
3
right atrium auricular region
3
skin of body
3
smooth muscle cell
3
spinal cord
3
substantia nigra
3
tibial artery
3
tibial nerve
2
Ammon's horn
2
B cell
2
CD4-positive helper T cell
2
Rh-4 cell
2
T-helper 1 cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
blood
2
bone marrow cell
2
cartilage tissue
2
cerebellum
2
coronary artery
2
cortex of kidney
2
differentiating adipose-derived stem cell
2
erythroid cell
2
esophagus muscularis mucosa
2
fibroblast of cardiac tissue
2
heart
2
hypothalamus
2
iPSC derived cell line
2
kidney
2
muscle
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
natural killer cell
2
neutrophil
2
nucleus accumbens
2
omental fat pad
2
osteoblast
2
ovary
2
placenta
2
prostate gland
2
skeletal muscle fiber
2
skeletal muscle tissue
2
skin fibroblast
2
small intestine
2
spleen
2
testis
2
thyroid gland
2
transverse colon
2
type I muscle cell
2
type II muscle cell
2
uterus
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
C1 segment of cervical spinal cord
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
HAC cell
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HeLa cell
1
HepG2
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
Leydig cell
1
LoVo cell
1
M059J
1
MCF-7
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
MOLM-13 cell
1
Myoblasts
1
NAMALWA cell
1
NB-4 cell
1
NCCIT cell
1
NCI-H226 cell
1
NHBE cell
1
NHDF cell
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
OCI-AML3
1
OCI-LY7
1
PA-TU-8988T cell
1
PANC-1 cell
1
PC-3
1
PC-9
1
Peyer's patch
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
RCC 7860
1
REH cell
1
RKO
1
RPMI7951
1
RPMI8226
1
RS4-11 cell
1
RWPE1
1
Rh-5 cell
1
Rhabdomyosarcoma
1
SAEC
1
SJCRH30
1
SJSA1
1
SK-CO-1
1
SK-N-DZ
1
SK-N-MC
1
SK-N-SH_RA
1
SKH1-Hr hr
1
SKMC
Organ
2
kidney
Date released
1
August, 2021
1
June, 2020
Software used
1
macs
1
matrix-eQTL
Lab
1
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
2
AMP
RFA
1
AMP
1
AMP2
biosample_term_name!
HAP-1
files.file_type!
bigWig
organ_slims!
embryo
Showing 2 of 2 results
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Download
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR920NWL
released
Annotation file set
: Accessible chromatin annotation for Kidney Fetal kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP