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Schema
Citing CMDGA
Clear Filters
Annotation type
31
candidate regulatory elements
19
chromatin state
17
target gene predictions
3
histone modifications
2
eQTL
1
accessible chromatin
1
binding sites
1
gene expression
1
variant allelic effects
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
DNase-seq
1
RNA-seq
Available data
1
bed bed3+
1
bigWig
1
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
31
monocyte
26
endothelial cell
23
retina
20
hepatocyte
20
pigmented layer of retina
17
epithelial cell of proximal tubule
17
islet of Langerhans
17
neural progenitor cell
16
EndoC_BH1
16
fibroblast
16
kidney
15
glomerular endothelial cell
14
excitatory neuron
14
macrophage
13
pancreatic ductal cell
11
cardiomyocytes
11
pancreatic beta cell
11
smooth muscle cell
10
endothelial cell of hepatic sinusoid
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pericyte cell
10
regulatory T cell
9
T-helper 1 cell
9
T-helper 17 cell
9
astrocyte
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
8
B cell
8
H1-hESC
8
pancreatic delta cell
8
retinal pigment epithelial cell
7
CD8-positive, alpha-beta T cell
7
adipocyte
7
embryonic stem cell
7
glomerular visceral epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesangial cell
7
skeletal muscle fiber
7
skeletal muscle satellite cell
7
subcutaneous adipose tissue
6
T cell
6
gamma-delta T cell
6
glutamatergic neuron
6
heart
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
pancreatic stellate cell
5
SGBS preadipocytes
5
T-helper 2 cell
5
adipose tissue
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
erythroblast
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
natural killer cell
5
osteoblast
4
T follicular helper cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
coronary artery
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
heart left ventricle
4
kidney connecting tubule epithelial cell
4
leukocyte
4
liver
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
omental fat pad
4
pancreatic polypeptide-secreting cell
4
right atrium auricular region
4
tibial nerve
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
cerebellum
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
frontal cortex
3
gabaergic neuron
3
glial cell
3
hepatic stellate cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mesenchymal stem cell
3
naive regulatory T cell
3
pancreas
3
plasma cell
3
smooth muscle cell of the coronary artery
3
tibial artery
3
type I pneumocyte
2
Ammon's horn
2
Kupffer cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
ascending aorta
2
basal cell
2
blood vessel smooth muscle cell
2
body of pancreas
2
brain
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
cholangiocyte
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
heart right ventricle
2
hippocampal neuron
2
keratinocyte
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
Organ
2
brain
Life stage
2
fetal
Date released
June, 2020
1
February, 2020
1
January, 2020
Software used
1
macs
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
Fine-mapped variants
month_released!
June, 2020
Showing 2 of 2 results
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Download
FileSet
DSR267EUN
released
Annotation file set
: Gene expression levels of Brain fetal from RNA-seq (GSE63634)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP