Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
8
target gene predictions
7
candidate regulatory elements
7
chromatin state
6
accessible chromatin
2
gene expression
2
histone modifications
1
binding sites
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
2
Gene expression levels
Annotation type Category
3
ATAC-seq
2
DNase-seq
1
RNA-seq
1
snATAC-seq
1
snRNA-seq
Available data
6
bed bed3+
1
bigWig
1
tsv
File set status
8
released
Genome assembly (visualization)
7
hg19
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
1
cell line
Biosample term
32
monocyte
24
retina
20
hepatocyte
20
pigmented layer of retina
17
epithelial cell of proximal tubule
17
islet of Langerhans
17
kidney
17
neural progenitor cell
16
EndoC_BH1
16
glomerular endothelial cell
15
endothelial cell
11
cardiomyocytes
11
pancreatic ductal cell
11
regulatory T cell
10
T-helper 1 cell
9
H1-hESC
9
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
8
endothelial cell of hepatic sinusoid
8
glomerular visceral epithelial cell
8
heart
8
retinal pigment epithelial cell
7
adipocyte
7
embryonic stem cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
osteoblast
7
pancreatic beta cell
7
subcutaneous adipose tissue
6
B cell
6
CD8-positive, alpha-beta T cell
6
SGBS preadipocytes
6
gamma-delta T cell
6
pancreatic acinar cell
6
pancreatic alpha cell
5
T-helper 2 cell
5
adipose tissue
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
liver
5
memory B cell
5
mesangial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreas
5
pancreatic delta cell
5
pancreatic stellate cell
5
right atrium auricular region
5
smooth muscle cell
5
tibial nerve
4
T follicular helper cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
coronary artery
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
frontal cortex
4
glutamatergic neuron
4
heart left ventricle
4
kidney connecting tubule epithelial cell
4
leukocyte
4
macrophage
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
mesenchymal stem cell
4
natural killer cell
4
nephron progenitor
4
omental fat pad
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
stomach
4
tibial artery
3
cardiac fibroblast
3
Ammon's horn
3
S-shaped body
3
adult endothelial progenitor cell
3
brain
3
caudate nucleus
3
cerebellum
3
hepatic stellate cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
naive B cell
3
naive regulatory T cell
3
occipital lobe
3
pancreatic polypeptide-secreting cell
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle myoblast
3
smooth muscle cell of the coronary artery
3
spleen
3
type I muscle cell
3
type II muscle cell
2
HepG2
2
Kupffer cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
Schwann cell
2
T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
aortic endothelial cell
2
ascending aorta
2
astrocyte
2
body of pancreas
2
bone marrow cell
2
brain pericyte
2
cardiac muscle cell
2
choroid plexus epithelial cell
2
differentiating adipose-derived stem cell
2
endothelial cell of umbilical vein
2
erythroid cell
2
excitatory neuron
2
fibroblast
2
fibroblast of cardiac tissue
2
glial cell
2
globus pallidus
2
heart right ventricle
2
hematopoietic multipotent progenitor cell
2
hippocampal neuron
2
kidney epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
left cardiac atrium
2
lower motor neuron
2
medulla oblongata
2
midbrain
2
muscle of leg
2
myeloid dendritic cell
2
naive B cel
2
neural cell
2
ovary
2
pancreatic endothelial cell
2
plasma cell
2
pons
2
renal pelvis
2
renal principal cell
2
renal vesicle
2
skin fibroblast
2
spinal cord
2
superior temporal gyrus
2
testis
2
uterus
2
vascular associated smooth muscle cell
2
visceral abdominal adipose tissue
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
C1 segment of cervical spinal cord
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
Organ
7
connective tissue
1
embryo
Life stage
1
adult
Date released
3
February, 2024
2
June, 2020
1
February, 2021
1
November, 2022
1
October, 2019
Software used
6
macs
2
r
1
deeptools
1
samtools
1
umitools
Lab
6
AMP-T2D consortium
2
Stephen Parker, UMich
Project
8
AMP
1
ENCODE
RFA
6
AMP
2
AMP2
annotation_type!
sQTL
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR227UQF
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H7 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP