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Schema
Citing CMDGA
Clear Filters
Annotation type
31
histone modifications
9
candidate regulatory elements
4
accessible chromatin
3
gene expression
3
target gene predictions
2
chromatin state
1
binding sites
Annotation Category
4
cis-regulatory elements
3
Gene expression levels
Annotation type Category
ATAC-seq
2
DNase-seq
2
RNA-seq
2
snATAC-seq
1
scRNA-seq
Available data
4
bed bed3+
3
tsv
2
bigWig
1
txt
File set status
7
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
5
primary cell
1
cell line
1
in vitro differentiated cells
Biosample term
25
endothelial cell
18
monocyte
17
epithelial cell of proximal tubule
16
fibroblast
16
glomerular endothelial cell
16
hepatocyte
15
macrophage
13
excitatory neuron
13
islet of Langerhans
13
pancreatic ductal cell
11
cardiomyocytes
11
smooth muscle cell
10
kidney
10
pericyte cell
10
regulatory T cell
9
H1-hESC
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
pancreatic acinar cell
9
pancreatic alpha cell
9
pancreatic beta cell
9
progenitor cell of endocrine pancreas
8
B cell
8
EndoC_BH1
8
T-helper 1 cell
8
astrocyte
8
pancreatic delta cell
7
T cell
7
T-helper 17 cell
7
glomerular visceral epithelial cell
7
heart
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
neural progenitor cell
7
skeletal muscle fiber
7
skeletal muscle satellite cell
6
CD8-positive, alpha-beta T cell
6
endothelial cell of hepatic sinusoid
6
kidney interstitial cell
6
pancreatic stellate cell
5
adipocyte
5
erythroblast
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
5
natural killer cell
5
osteoblast
5
subcutaneous adipose tissue
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
fibroblast of cardiac tissue
4
frontal cortex
4
gamma-delta T cell
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mesenchymal stem cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
pancreas
4
pancreatic polypeptide-secreting cell
4
right atrium auricular region
4
stomach
4
tibial nerve
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adipose tissue
3
adult endothelial progenitor cell
3
brain
3
caudate nucleus
3
central memory CD8-positive, alpha-beta T cell
3
cerebellum
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
endothelial cell of lymphatic vessel
3
enterocyte
3
glial cell
3
heart left ventricle
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
occipital lobe
3
omental fat pad
3
putamen
3
renal cortical epithelial cell
3
retina
3
retinal pigment epithelial cell
3
skeletal muscle myoblast
3
skin fibroblast
3
tibial artery
3
type I pneumocyte
2
Kupffer cell
2
Muller cell
2
Rh-4 cell
2
Schwann cell
2
T follicular helper cell
2
acute myeloid leukemia cell
2
adrenal gland
2
ascending aorta
2
basal cell
2
blood vessel smooth muscle cell
2
body of pancreas
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
cholangiocyte
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
coronary artery
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gabaergic neuron
2
globus pallidus
2
glutamatergic neuron
2
heart right ventricle
2
hematopoietic multipotent progenitor cell
2
keratinocyte
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
left cardiac atrium
Organ
1
blood
1
bodily fluid
Life stage
1
adult
Date released
2
June, 2020
2
May, 2021
1
August, 2021
1
January, 2021
1
November, 2021
Software used
4
macs
3
r
1
seurat
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
5
AMP
1
ENCODE
1
T1D
RFA
4
AMP
1
AMP2
1
ENCODE3
1
T1D
annotation_type_category!
ATAC-seq
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR706ISH
released
Annotation file set
: Accessible chromatin annotation for Blood CMK from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D