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Schema
Citing CMDGA
Clear Filters
Annotation type
5
gene expression
2
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
5
Gene expression levels
2
cis-regulatory elements
Annotation type Category
3
snDropSeq
1
ATAC-seq
1
DNase-seq
1
RNA-seq
1
scRNA-seq
Available data
4
tsv
3
txt
2
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
2
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
1
cell line
0
tissue
Biosample term
33
monocyte
25
endothelial cell
24
retina
21
hepatocyte
20
pigmented layer of retina
18
islet of Langerhans
17
epithelial cell of proximal tubule
17
kidney
16
fibroblast
16
glomerular endothelial cell
14
macrophage
12
excitatory neuron
12
regulatory T cell
11
pancreatic beta cell
11
pancreatic ductal cell
10
T-helper 1 cell
10
endothelial cell of hepatic sinusoid
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pericyte cell
10
smooth muscle cell
9
T-helper 17 cell
9
astrocyte
8
B cell
8
heart
8
pancreatic delta cell
7
CD8-positive, alpha-beta T cell
7
glomerular visceral epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesangial cell
7
osteoblast
7
skeletal muscle fiber
7
skeletal muscle satellite cell
7
subcutaneous adipose tissue
6
T cell
6
gamma-delta T cell
6
glutamatergic neuron
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
pancreatic stellate cell
5
T-helper 2 cell
5
adipose tissue
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
erythroblast
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
liver
5
natural killer cell
5
pancreas
5
right atrium auricular region
5
tibial nerve
4
T follicular helper cell
4
bone tissue
4
coronary artery
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
frontal cortex
4
heart left ventricle
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
omental fat pad
4
pancreatic polypeptide-secreting cell
4
stomach
4
tibial artery
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adipocyte
3
adult endothelial progenitor cell
3
brain
3
caudate nucleus
3
cerebellum
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glial cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
mesenchymal stem cell
3
naive regulatory T cell
3
occipital lobe
3
plasma cell
3
putamen
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
3
skeletal muscle myoblast
3
spleen
3
type I pneumocyte
2
Kupffer cell
2
Muller cell
2
Schwann cell
2
acute myeloid leukemia cell
2
adrenal gland
2
aortic endothelial cell
2
ascending aorta
2
basal cell
2
blood vessel smooth muscle cell
2
body of pancreas
2
bone marrow cell
2
capillary endothelial cell
2
cholangiocyte
2
ciliated cell
2
club cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
globus pallidus
2
heart right ventricle
2
keratinocyte
2
kidney epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
left cardiac atrium
2
luminal epithelial cell of mammary gland
2
mast cell
2
medulla oblongata
2
megakaryocyte
2
mesothelial cell
2
metanephros
Organ
7
epithelium
7
kidney
Life stage
5
adult
1
fetal
Date released
4
February, 2021
1
August, 2021
1
February, 2020
1
June, 2020
Software used
5
r
2
macs
Lab
6
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
7
AMP
RFA
6
AMP
1
AMP2
assembly!
hg18
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR291ATH
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Podocytes from GSE121862 snDropSeq kidney regions (medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR791QII
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Podocytes from GSE121862 snDropSeq kidney regions (cortex)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR884VIR
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Podocytes
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR588QPP
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of Pod from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR316SLV
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Podocytes from GSE121862 snDropSeq kidney regions (cortex and medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR012KGK
released
Annotation file set
: Accessible chromatin annotation for Kidney Glomerular visceral epithelial cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR459YGB
released
Annotation file set
: Gene expression levels of Kidney podocytes from RNA-seq (GSE115961)
Lab:
AMP-T2D consortium
Project:
AMP