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Citing CMDGA
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Annotation type
6
chromatin state
6
target gene predictions
4
accessible chromatin
4
candidate regulatory elements
1
binding sites
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
ATAC-seq
1
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
1
bigWig
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
33
monocyte
24
retina
20
pigmented layer of retina
17
islet of Langerhans
17
neural progenitor cell
16
EndoC_BH1
16
epithelial cell of proximal tubule
15
glomerular endothelial cell
12
pancreatic ductal cell
12
regulatory T cell
11
cardiomyocytes
10
T-helper 1 cell
10
hepatocyte
9
H1-hESC
9
endothelial cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
pancreatic beta cell
9
progenitor cell of endocrine pancreas
8
T-helper 17 cell
8
heart
8
pancreatic alpha cell
8
retinal pigment epithelial cell
7
B cell
7
glomerular visceral epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
osteoblast
7
pancreatic acinar cell
7
pancreatic delta cell
7
subcutaneous adipose tissue
6
CD8-positive, alpha-beta T cell
6
SGBS preadipocytes
6
embryonic stem cell
6
gamma-delta T cell
6
kidney interstitial cell
6
memory B cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
pancreatic stellate cell
5
T-helper 2 cell
5
adipocyte
5
adipose tissue
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
liver
5
mesangial cell
5
natural killer cell
5
pancreas
5
right atrium auricular region
5
tibial nerve
4
T follicular helper cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
coronary artery
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
frontal cortex
4
glutamatergic neuron
4
heart left ventricle
4
macrophage
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
omental fat pad
4
pancreatic polypeptide-secreting cell
4
stomach
4
tibial artery
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
brain
3
caudate nucleus
3
cerebellum
3
hepatic stellate cell
3
hepatocyte(AFP)
3
kidney
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
naive regulatory T cell
3
occipital lobe
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle myoblast
3
smooth muscle cell of the coronary artery
3
spleen
2
CD4-positive helper T cell
2
HepG2
2
Kupffer cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
Schwann cell
2
T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
aortic endothelial cell
2
ascending aorta
2
astrocyte
2
body of pancreas
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
choroid plexus epithelial cell
2
differentiating adipose-derived stem cell
2
endothelial cell of umbilical vein
2
erythroid cell
2
excitatory neuron
2
extracellular matrix secreting cell
2
fibroblast of cardiac tissue
2
globus pallidus
2
heart right ventricle
2
hematopoietic multipotent progenitor cell
2
hippocampal neuron
2
kidney epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
left cardiac atrium
2
leukocyte
2
lower motor neuron
2
medulla oblongata
2
mesenchymal stem cell
2
midbrain
2
muscle of leg
2
myeloid dendritic cell
2
naive B cel
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
ovary
2
pancreatic endothelial cell
2
plasma cell
Organ
5
connective tissue
Life stage
1
adult
Date released
1
February, 2021
1
February, 2024
1
June, 2020
1
November, 2022
1
October, 2019
Software used
4
macs
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
ENCODE
RFA
5
AMP
AMP2
award.project!
ENCODE
award.rfa!
AMP2
biosample_term_name!
H4
Showing 5 of 5 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP