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Schema
Citing CMDGA
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Annotation type
30
histone modifications
7
candidate regulatory elements
7
target gene predictions
4
accessible chromatin
4
gene expression
1
chromatin state
Annotation Category
4
Gene expression levels
4
cis-regulatory elements
Annotation type Category
3
RNA-seq
3
snATAC-seq
1
DNase-seq
1
scRNA-seq
Available data
4
bed bed3+
4
tsv
3
bigWig
1
txt
File set status
8
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
in vitro differentiated cells
Biosample term
31
monocyte
26
endothelial cell
24
retina
21
hepatocyte
20
pigmented layer of retina
18
islet of Langerhans
17
epithelial cell of proximal tubule
17
kidney
17
neural progenitor cell
16
EndoC_BH1
16
fibroblast
16
glomerular endothelial cell
15
macrophage
14
excitatory neuron
14
pancreatic ductal cell
11
cardiomyocytes
11
pancreatic beta cell
11
smooth muscle cell
10
endothelial cell of hepatic sinusoid
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pericyte cell
10
regulatory T cell
9
H1-hESC
9
astrocyte
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
8
B cell
8
T-helper 1 cell
8
adipocyte
8
glomerular visceral epithelial cell
8
heart
8
pancreatic delta cell
7
T cell
7
T-helper 17 cell
7
embryonic stem cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
osteoblast
7
skeletal muscle fiber
7
skeletal muscle satellite cell
7
subcutaneous adipose tissue
6
CD8-positive, alpha-beta T cell
6
SGBS preadipocytes
6
glutamatergic neuron
6
pancreatic stellate cell
5
adipose tissue
5
chondrocyte
5
erythroblast
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
liver
5
memory B cell
5
natural killer cell
5
pancreas
5
right atrium auricular region
5
tibial nerve
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
coronary artery
4
fibroblast of cardiac tissue
4
frontal cortex
4
gamma-delta T cell
4
heart left ventricle
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mesenchymal stem cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
omental fat pad
4
pancreatic polypeptide-secreting cell
4
stomach
4
tibial artery
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
brain
3
caudate nucleus
3
central memory CD8-positive, alpha-beta T cell
3
cerebellum
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glial cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
occipital lobe
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle myoblast
3
skin fibroblast
3
smooth muscle cell of the coronary artery
3
spleen
3
type I pneumocyte
2
CD4-positive helper T cell
2
HepG2
2
Kupffer cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
Schwann cell
2
T follicular helper cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
aortic endothelial cell
2
ascending aorta
2
basal cell
2
blood vessel smooth muscle cell
2
body of pancreas
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
cholangiocyte
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
Life stage
1
adult
Date released
2
January, 2021
2
May, 2021
1
August, 2021
1
February, 2024
1
June, 2020
1
November, 2021
Software used
4
macs
4
r
1
seurat
Lab
4
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Project
5
AMP
2
T1D
1
ENCODE
RFA
4
AMP
2
T1D
1
AMP2
1
ENCODE3
biosample_term_name!
AG04450 cell
Showing 8 of 8 results
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR420PAQ
released
Annotation file set
: Gene expression annotation for BLUEPRINT study of ncRNA-seq of EBI:E-MTAB-2319 for B Naive(CD19+ CD5- CD27-)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR878UFU
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of naive_B
Lab:
Kyle Gaulton, UCSD
Project:
T1D