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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
3
eQTL
3
gene expression
2
differential activity
2
histone modifications
2
target gene predictions
1
binding sites
Annotation Category
5
cis-regulatory elements
3
Gene expression levels
Annotation type Category
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
1
snATAC-seq
Available data
5
bed bed3+
3
bigWig
3
tsv
File set status
8
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
8
primary cell
Biosample term
24
endothelial cell
24
retina
21
hepatocyte
20
pigmented layer of retina
17
epithelial cell of proximal tubule
17
kidney
17
neural progenitor cell
16
fibroblast
16
glomerular endothelial cell
15
islet of Langerhans
14
excitatory neuron
14
macrophage
13
pancreatic ductal cell
11
cardiomyocytes
10
endothelial cell of hepatic sinusoid
10
pancreatic beta cell
10
pericyte cell
10
regulatory T cell
10
smooth muscle cell
9
H1-hESC
9
astrocyte
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
pancreatic acinar cell
9
pancreatic alpha cell
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
8
B cell
8
T-helper 1 cell
8
adipocyte
8
glomerular visceral epithelial cell
8
heart
7
T cell
7
T-helper 17 cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
osteoblast
7
pancreatic delta cell
7
skeletal muscle fiber
7
skeletal muscle satellite cell
7
subcutaneous adipose tissue
6
CD8-positive, alpha-beta T cell
6
SGBS preadipocytes
6
glutamatergic neuron
6
natural killer cell
6
pancreatic stellate cell
5
adipose tissue
5
chondrocyte
5
erythroblast
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
liver
5
memory B cell
5
monocyte
5
pancreas
5
right atrium auricular region
5
tibial nerve
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
coronary artery
4
fibroblast of cardiac tissue
4
frontal cortex
4
gamma-delta T cell
4
heart left ventricle
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mesenchymal stem cell
4
naive B cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
omental fat pad
4
stomach
4
tibial artery
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
brain
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
central memory CD8-positive, alpha-beta T cell
3
cerebellum
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glial cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
occipital lobe
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle myoblast
3
skin fibroblast
3
smooth muscle cell of the coronary artery
3
spleen
3
type I pneumocyte
2
CD4-positive helper T cell
2
HepG2
2
Kupffer cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
T follicular helper cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
aortic endothelial cell
2
ascending aorta
2
basal cell
2
blood vessel smooth muscle cell
2
body of pancreas
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
cholangiocyte
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
endocardial cell
Disease term
1
acute kidney failure
1
chronic kidney disease
Life stage
3
adult
Date released
May, 2021
3
September, 2023
2
June, 2020
2
May, 2020
1
January, 2021
Software used
3
macs
3
r
Lab
4
AMP-T2D consortium
3
KPMP
1
Kyle Gaulton, UCSD
Project
4
AMP
3
KPMP
1
T1D
RFA
4
AMP
3
KPMP
1
T1D
month_released!
May, 2021
organ_slims!
lymph node
Showing 8 of 8 results
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Download
FileSet
DSR665PME
released
Annotation file set
: Gene expression annotation of Cycling T Cell of healthy individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR681GXT
released
Annotation file set
: Gene expression annotation of Cycling T Cell of CKD individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR079RFQ
released
Annotation file set
: Gene expression annotation of Cycling T Cell of AKI individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR505TCS
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669PBL
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes-CD14+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR234HXR
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR157QFX
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR125CHQ
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated monocyte
Lab:
AMP-T2D consortium
Project:
AMP