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Schema
Citing CMDGA
Clear Filters
Annotation type
7
accessible chromatin
6
chromatin state
4
binding sites
2
candidate regulatory elements
2
histone modifications
2
target gene predictions
1
gene expression
Annotation Category
7
cis-regulatory elements
1
Gene expression levels
Annotation type Category
6
ATAC-seq
1
DNase-seq
1
RNA-seq
Available data
6
bed bed3+
1
tsv
File set status
8
released
Genome assembly (visualization)
6
hg19
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
cell line
1
primary cell
Biosample term
33
monocyte
26
endothelial cell
24
retina
21
hepatocyte
20
pigmented layer of retina
18
islet of Langerhans
17
epithelial cell of proximal tubule
17
kidney
17
neural progenitor cell
16
EndoC_BH1
16
fibroblast
16
glomerular endothelial cell
15
macrophage
14
excitatory neuron
14
pancreatic ductal cell
12
regulatory T cell
11
cardiomyocytes
11
pancreatic beta cell
11
smooth muscle cell
10
B cell
10
T-helper 1 cell
10
endothelial cell of hepatic sinusoid
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pericyte cell
9
H1-hESC
9
T-helper 17 cell
9
astrocyte
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
8
CD8-positive, alpha-beta T cell
8
adipocyte
8
glomerular visceral epithelial cell
8
heart
8
pancreatic delta cell
7
T cell
7
embryonic stem cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesangial cell
7
osteoblast
7
skeletal muscle fiber
7
skeletal muscle satellite cell
7
subcutaneous adipose tissue
6
SGBS preadipocytes
6
gamma-delta T cell
6
glutamatergic neuron
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
natural killer cell
6
pancreatic stellate cell
5
T-helper 2 cell
5
adipose tissue
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
erythroblast
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
liver
5
pancreas
5
right atrium auricular region
5
tibial nerve
4
T follicular helper cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
coronary artery
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of cardiac tissue
4
frontal cortex
4
heart left ventricle
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
mesenchymal stem cell
4
naive B cell
4
nephron progenitor
4
omental fat pad
4
pancreatic polypeptide-secreting cell
4
stomach
4
tibial artery
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
adult endothelial progenitor cell
3
brain
3
caudate nucleus
3
cerebellum
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glial cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
naive regulatory T cell
3
occipital lobe
3
plasma cell
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle myoblast
3
skin fibroblast
3
smooth muscle cell of the coronary artery
3
spleen
3
type I pneumocyte
2
CD4-positive helper T cell
2
HepG2
2
Kupffer cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
Schwann cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
aortic endothelial cell
2
ascending aorta
2
basal cell
2
blood vessel smooth muscle cell
2
body of pancreas
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
Organ
1
lymph node
Date released
6
May, 2021
1
June, 2020
1
November, 2022
Software used
7
macs
1
r
Lab
7
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
8
AMP
RFA
7
AMP
1
AMP2
biosample_term_name!
adult endothelial progenitor cell
endothelial cell of umbilical vein
Showing 8 of 8 results
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR727CZC
released
Annotation file set
: Accessible chromatin annotation for Blood GM10248 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP