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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
16
chromatin state
16
target gene predictions
3
accessible chromatin
3
histone modifications
2
eQTL
1
binding sites
1
variant allelic effects
0
gene expression
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
DNase-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
33
monocyte
25
endothelial cell
23
retina
21
hepatocyte
20
pigmented layer of retina
18
islet of Langerhans
17
epithelial cell of proximal tubule
17
neural progenitor cell
16
EndoC_BH1
16
fibroblast
15
glomerular endothelial cell
15
kidney
15
macrophage
14
excitatory neuron
14
pancreatic ductal cell
12
regulatory T cell
11
cardiomyocytes
11
pancreatic beta cell
11
smooth muscle cell
10
B cell
10
T-helper 1 cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pericyte cell
9
H1-hESC
9
T-helper 17 cell
9
astrocyte
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
8
CD8-positive, alpha-beta T cell
8
adipocyte
8
endothelial cell of hepatic sinusoid
8
pancreatic delta cell
7
T cell
7
embryonic stem cell
7
glomerular visceral epithelial cell
7
heart
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
osteoblast
7
skeletal muscle fiber
7
skeletal muscle satellite cell
7
subcutaneous adipose tissue
6
SGBS preadipocytes
6
gamma-delta T cell
6
glutamatergic neuron
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
natural killer cell
6
pancreatic stellate cell
5
T-helper 2 cell
5
adipose tissue
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
erythroblast
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
pancreas
5
right atrium auricular region
5
tibial nerve
4
T follicular helper cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
coronary artery
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of cardiac tissue
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
kidney interstitial cell
4
liver
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
mesenchymal stem cell
4
naive B cell
4
omental fat pad
4
pancreatic polypeptide-secreting cell
4
stomach
4
tibial artery
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
caudate nucleus
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
frontal cortex
3
gabaergic neuron
3
glial cell
3
heart left ventricle
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
leukocyte
3
naive regulatory T cell
3
plasma cell
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle myoblast
3
skin fibroblast
3
smooth muscle cell of the coronary artery
3
spleen
3
type I pneumocyte
2
cardiac fibroblast
2
CD4-positive helper T cell
2
HepG2
2
Kupffer cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
Schwann cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
aortic endothelial cell
2
ascending aorta
2
basal cell
2
blood vessel smooth muscle cell
2
body of pancreas
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
cerebellum
2
cholangiocyte
2
choroid plexus epithelial cell
2
ciliated cell
Organ
2
connective tissue
1
brain
Life stage
fetal
Date released
2
April, 2020
1
June, 2020
Software used
1
macs
Lab
2
Xin Sun, UCSD
1
AMP-T2D consortium
Project
2
LungMap
1
AMP
RFA
2
LungMap2
1
AMP
biosample_term_name!
HUES8
relevant_life_stage!
fetal
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR666HIS
released
Annotation file set
: ATAC-seq peaks in matrix fibroblast 1 from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR190LDQ
released
Annotation file set
: ATAC-seq peaks in matrix fibroblast 2 from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR147QJJ
released
Annotation file set
: Accessible chromatin annotation for Neural Fetal brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP