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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
3
binding sites
2
histone modifications
1
gene expression
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Gene expression levels
Annotation type Category
6
ATAC-seq
1
RNA-seq
Available data
5
bed bed3+
1
tsv
File set status
7
released
Genome assembly (visualization)
5
hg19
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
primary cell
Biosample term
33
monocyte
24
retina
20
hepatocyte
20
pigmented layer of retina
17
epithelial cell of proximal tubule
17
islet of Langerhans
17
kidney
17
neural progenitor cell
16
EndoC_BH1
16
endothelial cell
16
glomerular endothelial cell
12
pancreatic ductal cell
12
regulatory T cell
11
cardiomyocytes
10
T-helper 1 cell
9
H1-hESC
9
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
pancreatic beta cell
9
progenitor cell of endocrine pancreas
8
endothelial cell of hepatic sinusoid
8
glomerular visceral epithelial cell
8
heart
8
pancreatic alpha cell
8
retinal pigment epithelial cell
7
CD8-positive, alpha-beta T cell
7
adipocyte
7
embryonic stem cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
osteoblast
7
pancreatic acinar cell
7
pancreatic delta cell
7
subcutaneous adipose tissue
6
B cell
6
SGBS preadipocytes
6
gamma-delta T cell
6
memory B cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
pancreatic stellate cell
5
T-helper 2 cell
5
adipose tissue
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
liver
5
macrophage
5
mesangial cell
5
natural killer cell
5
pancreas
5
right atrium auricular region
5
smooth muscle cell
5
tibial nerve
4
T follicular helper cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
coronary artery
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
frontal cortex
4
glutamatergic neuron
4
heart left ventricle
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
mesenchymal stem cell
4
naive B cell
4
nephron progenitor
4
omental fat pad
4
pancreatic polypeptide-secreting cell
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
stomach
4
tibial artery
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
brain
3
caudate nucleus
3
cerebellum
3
hepatic stellate cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
naive regulatory T cell
3
occipital lobe
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle myoblast
3
smooth muscle cell of the coronary artery
3
spleen
3
type I muscle cell
3
type II muscle cell
2
CD4-positive helper T cell
2
HepG2
2
Kupffer cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
Schwann cell
2
T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
aortic endothelial cell
2
ascending aorta
2
astrocyte
2
body of pancreas
2
bone marrow cell
2
brain pericyte
2
cardiac muscle cell
2
choroid plexus epithelial cell
2
differentiating adipose-derived stem cell
2
endothelial cell of umbilical vein
2
erythroid cell
2
excitatory neuron
2
fibroblast
2
fibroblast of cardiac tissue
2
glial cell
2
globus pallidus
2
heart right ventricle
2
hematopoietic multipotent progenitor cell
2
hippocampal neuron
2
kidney epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
left cardiac atrium
2
lower motor neuron
2
medulla oblongata
2
midbrain
2
muscle of leg
Date released
6
May, 2021
1
November, 2022
Software used
6
macs
1
r
Lab
6
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
superior temporal gyrus
month_released!
April, 2020
November, 2021
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP