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Schema
Citing CMDGA
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Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
snATAC-seq
1
snRNA-seq
Available data
3
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
7
skeletal muscle fiber
7
skeletal muscle satellite cell
4
type I muscle cell
4
type II muscle cell
2
muscle of leg
hindlimb muscle
1
LHCN-M2
1
SJCRH30
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
esophagus muscularis mucosa
1
forelimb muscle
1
gastrocnemius medialis
1
gastrocnemius medialis(Muscle - Skeletal)
1
left ventricle myocardium
1
muscle of arm
1
psoas muscle
1
skeletal muscle cell
1
skeletal muscle tissue
Organ
4
musculature of body
Life stage
1
unknown
Date released
2
February, 2024
1
May, 2022
1
November, 2021
Software used
3
macs
1
deeptools
1
r
1
samtools
1
umitools
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
2
AMP2
1
AMP
1
ENCODE3
biosample_term_name!
hindlimb muscle
month_released!
August, 2021
Showing 4 of 4 results
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Download
FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR470SUP
released
Annotation file set
: Accessible chromatin annotation of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR209HNE
released
Annotation file set
: Cell type chromatin broad peaks and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR928HZI
released
Annotation file set
: Cell type gene expression mean TPM and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP