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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
105
monocyte
55
HeLa-S3
41
H1-hESC
36
CD8-positive, alpha-beta T cell
31
neural progenitor cell
27
retina
26
heart
25
K562
25
stomach
21
A549
21
brain
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
kidney
18
adrenal gland
17
lung
17
muscle of arm
17
placenta
17
small intestine
16
B cell
16
large intestine
16
liver
16
muscle of leg
16
thymus
14
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
12
hematopoietic multipotent progenitor cell
11
adipocyte
11
breast cancer cell
11
heart left ventricle
11
pancreas
11
renal pelvis
11
right kidney
10
EndoC_BH1
10
GM12878
10
HepG2
10
adipose tissue
10
right lung
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
Rhabdomyosarcoma
9
gastric cancer cell
9
hepatocyte
9
left kidney
9
spinal cord
8
H9
8
embryonic stem cell
8
islet of Langerhans
8
lymphocyte
8
neuroblastoma cell
8
osteoblast
8
pancreatic ductal cell
8
pituitary stalk
8
renal cortex interstitium
8
retinal pigment epithelial cell
8
spleen
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
fibroblast of cardiac tissue
7
natural killer cell
7
ovary
7
psoas muscle
7
sigmoid colon
6
Chondroid Chordoma
6
SGBS preadipocytes
6
T cell
6
T-helper 1 cell
6
cardiac muscle cell
6
caudate nucleus
6
chondrocyte
6
coronary artery
6
dendritic cell
6
endothelial cell of umbilical vein
6
foreskin fibroblast
6
foreskin keratinocyte
6
gastrocnemius medialis
6
hESC cell
6
heart right ventricle
6
keratinocyte
6
mesenchymal stem cell
6
regulatory T cell
6
trophoblast cell
5
CyT49
5
HUES8
5
Jurkat
5
T-cell acute lymphoblastic leukemia
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
bronchial epithelial cell
5
epithelial cell of prostate
5
hepatic stellate cell
5
liposarcoma
5
mammary epithelial cell
5
mononuclear cell
5
neuroblastoma cell line
5
neuronal stem cell
5
olfactory receptor cell
4
Ammon's horn
4
CD4-positive helper T cell
4
GM18507
4
GM19240
4
H7-hESC
4
HAP-1
4
HT-29
4
IMR-90
4
KARPAS-422 cell
4
LoVo cell
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Peyer's patch
4
Rh-4 cell
4
SK-N-DZ
4
U937
4
acute myeloid leukemia
4
acute myeloid leukemia cell
4
aorta
4
astrocyte
4
breast epithelium
4
cerebellum
4
chorion membrane
4
chorionic villus
4
choroid plexus epithelial cell
4
endocrine pancreas
4
fibroblast of dermis
4
fibroblast of lung
4
frontal cortex
4
globus pallidus
4
glutamatergic neuron
4
iPSC derived cell line
4
kidney tubule cell
4
layer of hippocampus
4
lymphoblastoid cell line
4
macrophage
4
mammary gland epithelial cell
4
melanoma cell
4
mesendoderm
4
muscle of trunk
4
occipital lobe
4
omental fat pad
4
osteosarcoma
pancreatic alpha cell
4
putamen
4
right atrium auricular region
4
squamous cell lung carcinoma
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
cardiac fibroblast
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
B-lymphocyte
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO205
3
Caco-2 cell
3
Ewing sarcoma
3
GM06990
3
GM12864
3
GM12865
3
GM19238
3
GM19239
3
GM23248
3
HCT-116 cell
3
HCT116
3
HEK293
3
HL-60
3
HuH-7
3
LHCN-M2
3
LNCAP
3
MDA-MB-231 cell
3
MG63
3
NCCIT cell
3
NT2-D1 cell
3
PC-3
3
RPMI8226
3
RS4-11 cell
3
RWPE1
3
SK-N-MC
3
SK-N-SH
3
SW480
3
Th1 cell
3
WERI-Rb-1
3
adipose-derived stem cell
3
aortic endothelial cell
3
ascending aorta
3
bipolar neuron
Life stage
1
embryonic
Date released
1
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
2
macs
1
abc
1
nospecificsoft_customcode
1
r
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
pancreatic alpha cell
Showing 5 of 5 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP