Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
accessible chromatin
3
chromatin state
3
target gene predictions
2
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
2
snATAC-seq
1
pCHi-C
Available data
7
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
54
HeLa-S3
40
H1-hESC
31
neural progenitor cell
27
retina
26
heart
26
kidney
24
K562
24
endothelial cell
23
stomach
22
fibroblast
21
brain
20
A549
20
pericyte cell
20
pigmented layer of retina
19
B cell
19
HFFc6
17
lung
17
macrophage
17
muscle of arm
16
adrenal gland
16
placenta
16
small intestine
15
hepatocyte
15
large intestine
15
liver
15
smooth muscle cell
15
thymus
14
muscle of leg
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
12
T cell
12
astrocyte
12
left lung
12
muscle of back
11
breast cancer cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
pancreatic beta cell
11
pancreatic ductal cell
11
renal pelvis
11
right kidney
10
fibroblast of cardiac tissue
10
retinal pigment epithelial cell
10
right lung
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
HepG2
9
Rhabdomyosarcoma
9
adipocyte
9
adipose tissue
9
gastric cancer cell
9
keratinocyte
9
left kidney
9
pancreas
9
pancreatic acinar cell
9
pancreatic alpha cell
8
CD8-positive, alpha-beta T cell
8
MCF-7
8
lymphocyte
8
natural killer cell
8
pancreatic delta cell
8
regulatory T cell
8
renal cortex interstitium
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
H9
7
colon epithelial cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
glutamatergic neuron
7
islet of Langerhans
7
mammary gland epithelial cell
7
monocyte
7
neuroblastoma cell
7
skeletal muscle satellite cell
7
spinal cord
6
Chondroid Chordoma
6
SGBS preadipocytes
6
T-helper 1 cell
6
caudate nucleus
6
chondrocyte
6
endothelial cell of hepatic sinusoid
6
erythroblast
6
foreskin keratinocyte
6
hESC cell
6
heart right ventricle
6
osteoblast
6
ovary
6
psoas muscle
6
sigmoid colon
6
spleen
5
CyT49
5
HUES8
5
T-cell acute lymphoblastic leukemia
5
T-helper 17 cell
5
T-helper 2 cell
5
bronchial epithelial cell
5
cardiac muscle cell
5
coronary artery
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
foreskin fibroblast
5
gabaergic neuron
5
gastrocnemius medialis
5
hepatic stellate cell
5
liposarcoma
5
mesenchymal stem cell
5
skin fibroblast
5
trophoblast cell
4
Ammon's horn
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
GM18507
4
GM19240
4
NAMALWA cell
4
Peyer's patch
4
Rh-4 cell
4
SK-N-DZ
4
acute myeloid leukemia
4
acute myeloid leukemia cell
4
aorta
4
blood vessel smooth muscle cell
4
body of pancreas
4
cerebellum
4
chorion membrane
4
chorionic villus
4
choroid plexus epithelial cell
4
embryonic stem cell
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of prostate
4
frontal cortex
4
globus pallidus
4
glomerular visceral epithelial cell
4
inhibitory neuron
4
kidney tubule cell
4
layer of hippocampus
4
luminal epithelial cell of mammary gland
4
lymphoblastoid cell line
4
mammary epithelial cell
4
megakaryocyte
4
memory B cell
4
mesendoderm
4
mononuclear cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
neuroblastoma cell line
4
neuronal stem cell
4
putamen
4
right atrium auricular region
4
squamous cell lung carcinoma
4
thyroid gland
4
tibial nerve
4
upper lobe of left lung
3
cardiac fibroblast
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
B-lymphocyte
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
CMK
3
COLO205
3
Caco-2 cell
3
EndoC_BH1
3
Ewing sarcoma
3
GM06990
3
GM12864
3
GM12865
3
GM19238
3
GM19239
3
GM23248
3
H7-hESC
3
HAP-1
3
HCT116
3
HEK293
3
HL-60
3
HT-29
3
HuH-7
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LHCN-M2
3
LoVo cell
3
MG63
3
MM.1S
3
NT2-D1 cell
3
OCI-LY7
3
PC-3
3
PC-9
3
RPMI8226
3
RS4-11 cell
3
RWPE1
3
SK-N-MC
3
SW480
Organ
7
connective tissue
Life stage
1
adult
1
embryonic
1
unknown
Date released
May, 2021
2
September, 2022
1
February, 2021
1
February, 2024
1
June, 2020
1
March, 2020
1
May, 2022
Software used
4
macs
2
r
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
6
AMP
1
AMP2
month_released!
May, 2021
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP