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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
4
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
2
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
107
monocyte
55
HeLa-S3
41
H1-hESC
40
CD8-positive, alpha-beta T cell
31
neural progenitor cell
27
retina
26
heart
26
kidney
25
K562
25
stomach
24
endothelial cell
22
fibroblast
21
A549
21
brain
20
B cell
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
macrophage
17
lung
17
muscle of arm
17
placenta
17
small intestine
16
hepatocyte
16
large intestine
16
liver
16
thymus
15
muscle of leg
15
smooth muscle cell
14
common myeloid progenitor, CD34-positive
13
adipocyte
13
astrocyte
13
excitatory neuron
13
pancreatic ductal cell
12
T cell
12
left lung
12
muscle of back
11
breast cancer cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
pancreatic beta cell
11
renal pelvis
11
right kidney
10
EndoC_BH1
10
GM12878
10
HepG2
10
adipose tissue
10
fibroblast of cardiac tissue
10
keratinocyte
10
natural killer cell
10
pancreas
10
pancreatic acinar cell
10
retinal pigment epithelial cell
10
right lung
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
Rhabdomyosarcoma
embryonic stem cell
9
gastric cancer cell
9
pancreatic alpha cell
9
spinal cord
8
H9
8
pancreatic delta cell
8
pituitary stalk
8
regulatory T cell
8
renal cortex interstitium
8
spleen
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
colon epithelial cell
7
diffuse intrinsic pontine glioma
7
erythroblast
7
esophageal adenocarcinoma
7
glutamatergic neuron
7
left kidney
7
lymphocyte
7
mammary gland epithelial cell
7
neuroblastoma cell
7
osteoblast
7
ovary
7
psoas muscle
7
sigmoid colon
7
skeletal muscle satellite cell
6
Chondroid Chordoma
6
SGBS preadipocytes
6
T-helper 1 cell
6
cardiac muscle cell
6
caudate nucleus
6
chondrocyte
6
coronary artery
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
foreskin fibroblast
6
foreskin keratinocyte
6
gastrocnemius medialis
6
hESC cell
6
heart right ventricle
6
islet of Langerhans
6
trophoblast cell
5
CD4-positive helper T cell
5
CyT49
5
HUES8
5
Jurkat
5
T-cell acute lymphoblastic leukemia
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
bronchial epithelial cell
cortical cell of adrenal gland
5
epithelial cell of prostate
5
gabaergic neuron
5
hepatic stellate cell
5
mammary epithelial cell
5
mesenchymal stem cell
5
neuronal stem cell
5
skin fibroblast
4
Ammon's horn
4
CD4-positive, alpha-beta T cell
4
GM18507
4
GM19240
4
H7-hESC
4
HAP-1
4
HT-29
4
IMR-90
4
KARPAS-422 cell
4
LoVo cell
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Peyer's patch
4
Rh-4 cell
4
SK-N-DZ
4
U937
4
acute myeloid leukemia
4
acute myeloid leukemia cell
4
aorta
4
blood vessel smooth muscle cell
4
breast epithelium
4
cerebellum
4
chorion membrane
4
chorionic villus
4
choroid plexus epithelial cell
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of dermis
4
fibroblast of lung
4
frontal cortex
4
globus pallidus
4
glomerular visceral epithelial cell
4
inhibitory neuron
4
lymphoblastoid cell line
4
memory B cell
4
mesendoderm
4
mononuclear cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
neuroblastoma cell line
4
putamen
4
right atrium auricular region
4
squamous cell lung carcinoma
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
cardiac fibroblast
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
B-lymphocyte
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO205
3
Caco-2 cell
3
Ewing sarcoma
3
GM06990
3
GM12864
3
GM12865
3
GM19238
3
GM19239
3
GM23248
3
HCT-116 cell
3
HCT116
3
HEK293
3
HL-60
3
HuH-7
3
LHCN-M2
3
LNCAP
3
MDA-MB-231 cell
3
MG63
3
NCCIT cell
3
NT2-D1 cell
Organ
8
connective tissue
Life stage
1
adult
1
embryonic
1
unknown
Date released
2
September, 2022
1
February, 2021
1
February, 2024
1
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
Software used
4
macs
2
r
1
abc
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
biosample_term_name!
cortical cell of adrenal gland
embryonic stem cell
Showing 8 of 8 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP