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Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
6
chromatin state
2
accessible chromatin
2
gene expression
2
target gene predictions
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
4
bed bed3+
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
88
monocyte
31
CD8-positive, alpha-beta T cell
16
neural progenitor cell
11
breast cancer cell
9
Rhabdomyosarcoma
9
gastric cancer cell
8
neuroblastoma cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
HepG2
6
hESC cell
6
liposarcoma
6
neuroblastoma cell line
6
squamous cell lung carcinoma
5
T-cell acute lymphoblastic leukemia
5
hepatocyte
5
melanoma cell
5
osteosarcoma
4
B cell
4
Rh-4 cell
4
acute myeloid leukemia
4
acute myeloid leukemia cell
4
brain
4
fibroblast
4
fibroblast of cardiac tissue
4
lymphoblastoid cell line
4
mammary epithelial cell
4
neuronal stem cell
4
osteoblast
4
rhabdomyosarcoma cell
4
stomach
3
B-lymphocyte
3
COLO205
3
Ewing sarcoma
3
Jurkat
3
MCF-7
3
RS4-11 cell
3
T cell
3
Th1 cell
3
adipocyte
3
bone marrow cell
3
bronchial epithelial cell
3
diffuse large B-cell lymphoma
3
endothelial cell
3
erythroid cell
3
esophageal squamous cell carcinoma
3
foreskin fibroblast
3
glioblastoma cell
3
glioma cell
3
heart
3
hepatic stellate cell
3
keratinocyte
3
kidney
3
liver
3
lymphoblast
3
macrophage
3
mesenchymal stem cell
3
natural killer cell
3
pancreas
3
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
placenta
3
prostate gland
3
regulatory T cell
3
skin fibroblast
3
spinal cord
3
tracheal epithelial cell
2
786-O cell
2
A-673 cell
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
Caco-2 cell
2
D341 Med cell
2
G-401 cell
2
GM06990
2
GM12864
2
GM12865
2
GM12878
2
GM18507
2
GM19240
2
GM23248
2
H1-hESC
2
H7-hESC
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HeLa cell
2
HuH-7
2
IMR-90
2
Ishikawa
2
K562
2
KARPAS-422 cell
2
Kasumi-1
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MCF10A-Er-Src cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Myoblasts
2
NAMALWA cell
2
NB-4 cell
2
NCCIT cell
2
NHBE cell
2
NHDF cell
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
OCI-AML3
2
OCI-LY7
2
PA-TU-8988T cell
2
PANC-1 cell
2
PC-3
2
PC-9
2
REH cell
2
RKO
2
RPMI8226
2
RWPE1
2
Rh-5 cell
2
SAEC
2
SK-N-DZ
2
SK-N-MC
2
SK-N-SH_RA
2
SKMC
2
SW480
2
Saos-2 cell
2
T-47D cell
2
Th17 cell
2
U-266 cell
2
U-87 MG
2
U2OS
2
U937
2
WERI-Rb-1
2
WI-38 cell
2
Z-138
2
ZR-75-1 cell
2
aortic adventitial fibroblast
2
cardiac muscle cell
2
cardiac myocyte cell derived cell line
2
caudate nucleus
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
colon cancer cell line
2
cortex of kidney
2
dermal fibroblast
2
embryonic stem cell
2
endometriosis
2
epithelial cell of prostate
2
epithelial ovarian cancer cell
2
erythroid progenitor cell
2
esophageal carcinoma
2
esophageal epithelial cell
2
fibroblast cell line
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
foreskin keratinocyte
2
foreskin melanocyte
2
glial cell
2
glioblastoma multiforme cancer stem cell
2
globus pallidus
2
hESC H9
2
hematopoietic cell
2
hematopoietic multipotent progenitor cell
2
iPS DF 4.7 Cell Line
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
islet of Langerhans
2
large intestine
2
leukemic stem cell
2
lung fibroblast cell line
2
mammary gland epithelial cell
2
mantle cell lymphoma cell
2
medulloblastoma cell line
2
mesendoderm
2
metastatic melanoma
2
midbrain
2
multiple myeloma cell line
2
neoplastic cell
2
occipital lobe
Organ
3
connective tissue
Date released
1
February, 2021
1
February, 2024
1
June, 2020
Software used
3
macs
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
annotation_type_category!
ATAC-seq
files.file_type!
bigWig
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP