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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
7
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
snATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
7
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
Biosample term
18
fibroblast
10
pericyte cell
7
adipocyte
7
osteoblast
6
chondrocyte
6
fibroblast of cardiac tissue
5
hepatic stellate cell
4
mesenchymal stem cell
4
pancreatic stellate cell
4
skin fibroblast
3
cardiac fibroblast
3
foreskin fibroblast
3
preadipocyte
2
GM23248
2
adipose tissue
2
brain pericyte
2
extracellular matrix secreting cell
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
mesangial cell
2
omental fat pad
2
pulmonary interstitial fibroblast
2
subcutaneous adipose tissue
1
SGBS preadipocytes
1
adipose tissue derived mesenchymal stem cell
1
adipose-derived mesenchymal stem cell
1
cartilage tissue
1
columnar chondrocyte
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
fibroblast of peridontal ligament
1
fibroblast of the conjunctiva
1
luteal cell
1
stromal cell
0
Brodmann (1909) area 9
0
COLO-320 cell
Organ
7
connective tissue
1
brain
Date released
2
February, 2024
1
February, 2021
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
7
macs
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
6
AMP
1
ENCODE
RFA
5
AMP
1
AMP2
1
ENCODE3
Showing 7 of 7 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP