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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
variant allelic effects
1
gene expression
0
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
3
bigWig
File set status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
7
in vitro differentiated cells
4
cell line
3
primary cell
Biosample term
104
monocyte
34
CD8-positive, alpha-beta T cell
16
endothelial cell
16
fibroblast
12
excitatory neuron
12
hepatocyte
12
macrophage
10
pericyte cell
9
astrocyte
9
smooth muscle cell
8
pancreatic beta cell
8
pancreatic ductal cell
7
osteoblast
7
pancreatic alpha cell
6
B cell
6
T cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
pancreatic acinar cell
6
regulatory T cell
5
erythroblast
5
inhibitory neuron
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
acute myeloid leukemia cell
4
hepatic stellate cell
4
keratinocyte
4
mammary epithelial cell
4
memory B cell
4
natural killer cell
4
retinal pigment epithelial cell
4
type II pneumocyte
3
cardiac fibroblast
3
T-helper 1 cell
3
aortic endothelial cell
3
bone marrow cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
foreskin fibroblast
3
gabaergic neuron
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
plasma cell
3
preadipocyte
3
skeletal muscle myoblast
3
tracheal epithelial cell
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
B-lymphocyte
2
CD1c-positive myeloid dendritic cell
2
Ishikawa
2
Muller cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
Th1 cell
2
Th17 cell
2
adipocyte
2
aortic adventitial fibroblast
2
basal cell
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
gamma-delta T cell
2
glial cell
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mantle cell lymphoma cell
2
mast cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
naive regulatory T cell
2
neoplastic cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
peripheral blood stem cell
2
plasmacytoid dendritic cell
2
pre-B acute lymphoblastic leukemia cell
2
pulmonary artery endothelial cell
2
pulmonary interstitial fibroblast
2
renal cortical epithelial cell
2
renal epithelial cell
2
schwann cell
2
skin fibroblast
2
smooth muscle cell of the esophagus
2
trophoblast cell
1
Adipose stromal cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
Glioblastoma
1
Rhabdoid Tumor of the Kidney
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
alveolar cell type II
1
alveolar macrophage
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
bone cell
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac endothelial cell
1
cardiac muscle cell
1
cardiac muscle myoblast
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
chronic lymphocytic leukemia cell
1
ciliated epithelial cell
1
colon goblet cell
1
columnar chondrocyte
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
erythroid progenitor cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of peridontal ligament
1
foveolar cell of stomach
1
gastric goblet cell
1
goblet cell
1
granular cell of epidermis
1
granulocyte
1
head and neck neoplasia
1
head and neck squamous cell carcinoma
1
hepatoblast
1
immature natural killer cell
1
intestinal epithelial cell
1
intestinal tuft cell
1
iris pigment epithelial cell
1
islet of Langerhans
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukemic stem cell
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mature NK T cell
1
mature neutrophil
1
melanocyte
1
meningioma cell
1
meso-epithelial cell
1
metanephros
1
microglial cell
Organ
3
epithelium
3
intestine
Date released
3
November, 2021
Software used
3
macs
Lab
3
Bing Ren, UCSD
Project
3
ENCODE
RFA
3
ENCODE3
Showing 3 of 3 results
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Download
FileSet
DSR989BFJ
released
Annotation file set
: Accessible chromatin annotation of Fetal Enterocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR315JBQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Enterocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR510QEM
released
Annotation file set
: Accessible chromatin annotation of Fetal Enterocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE