Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
0
histone modifications
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
in vitro differentiated cells
2
primary cell
Biosample term
104
monocyte
34
CD8-positive, alpha-beta T cell
24
retina
20
pigmented layer of retina
17
endothelial cell
17
fibroblast
14
macrophage
12
excitatory neuron
12
hepatocyte
12
kidney
11
breast cancer cell
10
pancreatic ductal cell
10
pericyte cell
9
EndoC_BH1
9
Rhabdomyosarcoma
9
astrocyte
9
gastric cancer cell
9
smooth muscle cell
8
islet of Langerhans
8
neuroblastoma cell
8
pancreatic acinar cell
8
pancreatic beta cell
7
HepG2
7
T cell
7
osteoblast
7
pancreatic alpha cell
6
B cell
6
B-lymphoblastoid cell line
6
diffuse intrinsic pontine glioma
6
endothelial cell of hepatic sinusoid
6
fibroblast of cardiac tissue
6
glutamatergic neuron
6
heart
6
liposarcoma
6
liver
6
pancreas
6
regulatory T cell
6
squamous cell lung carcinoma
5
Chondroid Chordoma
5
brain
5
erythroblast
5
esophageal adenocarcinoma
5
hESC cell
5
hepatic stellate cell
5
inhibitory neuron
5
keratinocyte
5
melanoma cell
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
Rh-4 cell
4
acute myeloid leukemia
4
acute myeloid leukemia cell
4
heart left ventricle
4
lymphoblastoid cell line
4
mammary epithelial cell
4
memory B cell
4
natural killer cell
4
osteosarcoma
4
pancreatic stellate cell
4
retinal pigment epithelial cell
4
stomach
4
type II pneumocyte
3
cardiac fibroblast
3
B-lymphocyte
3
COLO205
3
Ewing sarcoma
3
Jurkat
3
MCF-7
3
RS4-11 cell
3
T-helper 1 cell
3
aortic endothelial cell
3
bone marrow cell
3
bronchial epithelial cell
3
cardiac muscle cell
3
caudate nucleus
3
choroid plexus epithelial cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
esophageal squamous cell carcinoma
3
foreskin fibroblast
3
gabaergic neuron
3
glial cell
3
glioblastoma cell
3
glioma cell
3
globus pallidus
3
glomerular visceral epithelial cell
3
lymphoblast
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
placenta
3
plasma cell
3
preadipocyte
3
prostate gland
3
putamen
3
right atrium auricular region
3
skeletal muscle myoblast
3
skin fibroblast
3
spinal cord
3
superior temporal gyrus
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
786-O cell
2
A-673 cell
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
BE(2)-C
2
BJ cell
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caco-2 cell
2
D341 Med cell
2
G-401 cell
2
GM06990
2
GM12864
2
GM12865
2
GM12878
2
GM18507
2
GM19240
2
GM23248
2
H1-hESC
2
H7-hESC
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HeLa cell
2
HuH-7
2
IMR-90
2
Ishikawa
2
K562
2
KARPAS-422 cell
2
Kasumi-1
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MCF10A-Er-Src cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Muller cell
2
Myoblasts
2
NAMALWA cell
2
NB-4 cell
2
NCCIT cell
2
NHBE cell
2
NHDF cell
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
OCI-AML3
2
OCI-LY7
2
PA-TU-8988T cell
2
PANC-1 cell
2
PC-3
2
PC-9
2
REH cell
2
RKO
2
RPMI8226
2
RWPE1
2
Rh-5 cell
2
SAEC
2
SK-N-DZ
2
SK-N-MC
2
SK-N-SH_RA
2
SKMC
2
SW480
2
Saos-2 cell
2
T follicular helper cell
2
T-47D cell
2
T-helper 17 cell
2
T-helper 2 cell
2
Th1 cell
2
Th17 cell
2
U-266 cell
2
U-87 MG
2
U2OS
2
U937
2
WERI-Rb-1
2
WI-38 cell
Organ
2
bone element
2
bone marrow
Date released
1
January, 2021
1
November, 2021
Software used
2
macs
Lab
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
1
ENCODE
1
T1D
RFA
1
ENCODE3
1
T1D
biosample_term_name!
central memory CD8-positive, alpha-beta T cell
biosample_type!
in vitro differentiated cells
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR326TXQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Megakaryocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR213MXZ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D