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Schema
Citing CMDGA
Clear Filters
Annotation type
58
target gene predictions
9
candidate regulatory elements
binding sites
4
chromatin state
3
accessible chromatin
2
gene expression
2
histone modifications
1
eQTL
0
sQTL
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
1
Ishikawa
1
uterine smooth muscle cell
1
uterus
Organ
187
epithelium
84
connective tissue
59
eye
50
kidney
42
brain
41
pancreas
36
vasculature
27
musculature of body
26
blood vessel
26
heart
24
liver
21
intestine
20
limb
15
lung
14
bone element
13
skin of body
12
blood
12
bodily fluid
12
embryo
11
artery
10
large intestine
9
extraembryonic component
8
lymph node
8
skeleton
8
stomach
7
adipose tissue
7
adrenal gland
7
mammary gland
5
gonad
5
prostate gland
4
esophagus
4
lymphatic vessel
4
placenta
4
ureter
3
bronchus
3
nerve
3
penis
3
small intestine
3
uterus
2
lymphoid tissue
2
ovary
2
spinal cord
2
spleen
2
testis
2
thymus
2
thyroid gland
2
vein
1
bone marrow
1
breast
1
mouth
1
nose
1
tongue
1
trachea
1
urinary bladder
Date released
2
June, 2020
1
November, 2021
Software used
3
macs
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
annotation_type!
binding sites
lab.title!
Kyle Gaulton, UCSD
Showing 3 of 3 results
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Download
FileSet
DSR680BYM
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Uterine) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR373YCF
released
Annotation file set
: Accessible chromatin annotation for Uterus Uterus from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR250RSS
released
Annotation file set
: Accessible chromatin annotation for Uterus Ishikawa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP