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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
candidate regulatory elements
1
binding sites
1
chromatin state
1
histone modifications
0
accessible chromatin
Annotation Category
3
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
55
HeLa-S3
39
H1-hESC
25
retina
23
K562
23
heart
21
stomach
20
pigmented layer of retina
19
A549
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
brain
17
lung
17
monocyte
17
muscle of arm
17
small intestine
16
kidney
15
muscle of leg
15
neural progenitor cell
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
thymus
13
left lung
13
liver
13
muscle of back
12
B cell
11
right kidney
11
right lung
10
adipose tissue
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
adipocyte
9
left kidney
9
spleen
8
GM12878
8
H9
8
pancreas
8
psoas muscle
8
retinal pigment epithelial cell
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
lymphocyte
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
coronary artery
6
dendritic cell
6
embryonic stem cell
6
heart right ventricle
6
islet of Langerhans
6
mononuclear cell
6
olfactory receptor cell
6
ovary
5
CD8-positive, alpha-beta T cell
5
SGBS preadipocytes
5
T-helper 1 cell
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
chondrocyte
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
mesenchymal stem cell
5
muscle of trunk
5
natural killer cell
5
osteoblast
5
pancreatic beta cell
5
pancreatic ductal cell
5
regulatory T cell
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CyT49
4
HUES8
4
HepG2
4
T cell
4
aorta
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
glutamatergic neuron
4
hepatocyte
4
iPSC derived cell line
4
omental fat pad
4
pancreatic acinar cell
4
pancreatic alpha cell
4
right atrium auricular region
4
skeletal muscle myoblast
4
tibial artery
3
cardiac fibroblast
3
Ammon's horn
3
HCT116
3
Peyer's patch
3
SK-N-SH
3
ascending aorta
3
astrocyte
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
frontal cortex
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney tubule cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
mammary gland epithelial cell
3
mesendoderm
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
pancreatic delta cell
3
pancreatic stellate cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
testis
3
thoracic aorta
3
trophoblast
3
upper lobe of left lung
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
T follicular helper cell
2
T-cell
2
T47D
2
THP-1
2
U937
2
adipose-derived stem cell
2
angular gyrus
2
aortic endothelial cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
bipolar neuron
2
brain microvascular endothelial cell
2
bronchial epithelial cell
2
central memory CD8-positive, alpha-beta T cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
duodenal mucosa
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endodermal cell
2
endothelial cell
2
epithelial cell of proximal tubule
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
gamma-delta T cell
2
globus pallidus
2
glomerular endothelial cell
Life stage
1
embryonic
Date released
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
1
abc
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
annotation_type!
candidate regulatory elements
month_released!
June, 2020
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP