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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
DNase-seq
1
ChIP-seq
Available data
3
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
27
heart
27
retina
25
kidney
24
stomach
20
pigmented layer of retina
19
brain
18
adrenal gland
18
muscle of arm
18
small intestine
17
lung
16
muscle of leg
16
placenta
15
large intestine
15
thymus
14
liver
13
left lung
13
muscle of back
12
heart left ventricle
12
renal pelvis
12
right kidney
12
right lung
11
adipose tissue
11
pancreas
11
renal cortex interstitium
10
spleen
9
left kidney
9
psoas muscle
9
spinal cord
8
coronary artery
8
islet of Langerhans
8
sigmoid colon
8
tibial nerve
7
heart right ventricle
7
ovary
7
right atrium auricular region
7
tibial artery
6
body of pancreas
6
caudate nucleus
6
gastrocnemius medialis
6
thyroid gland
6
transverse colon
5
frontal cortex
5
muscle of trunk
4
Ammon's horn
4
Peyer's patch
4
aorta
4
ascending aorta
4
breast epithelium
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
globus pallidus
4
left renal cortex interstitium
4
left renal pelvis
4
medulla oblongata
4
midbrain
4
occipital lobe
4
omental fat pad
4
pons
4
putamen
4
right renal cortex interstitium
4
right renal pelvis
4
superior temporal gyrus
4
testis
4
thoracic aorta
4
trophoblast
4
upper lobe of left lung
3
cerebellum
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
layer of hippocampus
3
left cardiac atrium
3
limb
3
middle frontal gyrus
3
prostate gland
3
skeletal muscle tissue
3
subcutaneous adipose tissue
3
tongue
3
urinary bladder
3
uterus
2
hindlimb muscle
2
muscle of leg
2
Brodmann (1909) area 46
2
angular gyrus
2
cerebellar cortex
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
embryonic facial prominence
2
inferior parietal cortex
2
lower leg skin
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
pancreatic ductal cell
2
pancreatic stellate cell
2
parathyroid adenoma
2
right cardiac atrium
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
umbilical cord
2
vagina
1
left kidney
1
omental fat pad
1
Schwann cell
1
amnion
1
arm bone
1
beige adipocyte
1
bladder (urinary bladder)
1
cardiac ventricle
1
cerebellum (Hemisphere)
1
cortex of kidney
1
crypt of Lieberkuhn
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsolateral prefrontal cortex
1
endothelial cell
1
femur
1
fetal heart
1
forelimb muscle
1
gastric (mucosa of stomach)
1
gastroesophageal sphincter
1
germinal center
1
germinal matrix
1
glomerular epithelium
1
leg bone
1
mucosa of stomach
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
prefrontal cortex
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
rectum smooth muscle tissue
1
renal cortex tubule
1
right lobe of liver
1
skin of body
1
tissue-resident macrophage
1
type B pancreatic cell
1
white adipose tissue
Organ
4
brain
Life stage
3
adult
Date released
1
January, 2020
1
June, 2020
1
May, 2020
1
September, 2022
Software used
2
macs
1
deltasvm
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
gene expression
Showing 4 of 4 results
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Download
FileSet
DSR879GYA
released
Annotation file set
: Target gene predictions for BSS01451 pons from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR060QZO
released
Annotation file set
: Accessible chromatin annotation for Neural Pons from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR982FHO
released
Annotation file set
: Variant allelic effects of pons ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR354BDQ
released
Annotation file set
: Accessible chromatin annotation of brain pons from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP