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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
0
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
ATAC-seq
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
16
fibroblast
15
endothelial cell
14
macrophage
13
B cell
13
common myeloid progenitor, CD34-positive
12
excitatory neuron
11
pericyte cell
10
T cell
9
CD4-positive, alpha-beta memory T cell
9
pancreatic alpha cell
9
pancreatic beta cell
9
smooth muscle cell
8
astrocyte
8
pancreatic delta cell
7
CD8-positive, alpha-beta memory T cell
7
regulatory T cell
6
erythroblast
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic ductal cell
6
skeletal muscle satellite cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
inhibitory neuron
5
monocyte
5
skeletal muscle fiber
5
trophoblast cell
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
T-helper 1 cell
4
foreskin keratinocyte
4
hepatic stellate cell
4
hepatocyte
4
keratinocyte
4
kidney tubule cell
4
mammary gland epithelial cell
4
megakaryocyte
4
osteoblast
4
retinal pigment epithelial cell
4
skeletal muscle myoblast
4
skin fibroblast
4
type II pneumocyte
3
cardiac fibroblast
3
CD4-positive, alpha-beta T cell
3
T-helper 17 cell
3
T-helper 2 cell
3
activated CD4-positive, alpha-beta T cell
3
bronchial epithelial cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
glomerular endothelial cell
3
luminal epithelial cell of mammary gland
3
memory B cell
3
naive B cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
renal cortical epithelial cell
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
CD1c-positive myeloid dendritic cell
2
Muller cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain microvascular endothelial cell
2
capillary endothelial cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
conventional dendritic cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
foreskin fibroblast
2
gabaergic neuron
2
glial cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
2
iris pigment epithelial cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
leukocyte
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
myoepithelial cell of mammary gland
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
non-pigmented ciliary epithelial cell
2
oligodendrocyte precursor cell
2
plasmacytoid dendritic cell
2
pulmonary artery endothelial cell
2
schwann cell
2
skeletal muscle cell
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
2
stellate neuron
1
B-Lymphocytes
1
B-lymphocyte
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
aortic adventitial fibroblast
astrocyte of the spinal cord
1
basal cell of epidermis
1
brain pericyte
1
cardiac endothelial cell
1
cardiac muscle cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
erythrocyte
1
erythroid cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of gingiva
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
foreskin melanocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
goblet cell
1
granular cell of epidermis
1
hepatoblast
1
inflammatory macrophage
1
intestinal tuft cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
lung microvascular endothelial cell
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
mammary stem cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
myoepithelial cell
1
myofibroblast cell
1
naive t cell
1
neoplastic cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
non keratinizing barrier epithelial cell
1
oligodendrocyte
1
pancreatic endothelial cell
Organ
2
esophagus
Date released
2
November, 2021
Software used
2
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
annotation_type_category!
ATAC-seq
biosample_term_name!
astrocyte of the spinal cord
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR279PTE
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR530GKX
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE