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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
accessible chromatin
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
13
DNase-seq
ChIP-seq
2
pCHi-C
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
4
thymus
1
fetal thymocyte
Organ
286
epithelium
126
connective tissue
96
pancreas
69
embryo
59
eye
58
brain
57
uterus
50
kidney
44
blood
44
bodily fluid
43
vasculature
39
heart
39
intestine
39
musculature of body
32
blood vessel
31
liver
23
limb
23
lung
23
skin of body
21
large intestine
17
bone element
15
stomach
14
adrenal gland
13
artery
adipose tissue
12
extraembryonic component
12
mammary gland
10
pituitary gland
9
lymph node
8
gonad
8
skeleton
7
esophagus
7
prostate gland
7
small intestine
5
lymphatic vessel
5
ovary
5
placenta
5
thymus
4
bone marrow
4
bronchus
4
penis
4
spleen
4
thyroid gland
4
ureter
4
vein
3
lymphoid tissue
3
nerve
3
spinal cord
2
breast
2
testis
2
urinary bladder
1
mouth
1
nose
1
tongue
1
trachea
Date released
1
June, 2020
1
March, 2020
1
May, 2020
1
May, 2021
1
November, 2021
Software used
2
macs
1
abc
1
chicago
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
annotation_type_category!
ChIP-seq
organ_slims!
adipose tissue
Showing 5 of 5 results
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Download
FileSet
DSR843GFB
released
Annotation file set
: Accessible chromatin annotation of Fetal Thymocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR118ZZL
released
Annotation file set
: enhancer-gene predicton of thymus_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR861FFM
released
Annotation file set
: Accessible chromatin annotation for Others Thymus from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR149GJC
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of thymus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625WQC
released
Annotation file set
: A target gene prediction annotation in Human Thymus of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP