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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
2
accessible chromatin
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
DNase-seq
2
ChIP-seq
2
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
stem cell
Biosample term
51
HeLa-S3
37
H1-hESC
23
endothelial cell
21
retina
20
fibroblast
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
18
monocyte
16
K562
15
macrophage
15
smooth muscle cell
13
excitatory neuron
11
neural progenitor cell
11
pancreatic beta cell
10
astrocyte
10
pancreatic alpha cell
9
EndoC_BH1
9
pancreatic acinar cell
9
pancreatic delta cell
9
pancreatic ductal cell
8
glutamatergic neuron
7
B cell
7
CD8-positive, alpha-beta T cell
7
embryonic stem cell
7
hepatocyte
7
islet of Langerhans
7
kidney
7
retinal pigment epithelial cell
6
GM12878
6
H9
6
T cell
6
colon epithelial cell
6
endothelial cell of hepatic sinusoid
6
erythroblast
6
lymphocyte
6
memory B cell
6
olfactory receptor cell
6
skeletal muscle satellite cell
6
type II pneumocyte
5
SGBS preadipocytes
5
adipocyte
5
chondrocyte
5
cortical cell of adrenal gland
5
gabaergic neuron
5
inhibitory neuron
5
liver
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
skeletal muscle fiber
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
iPSC derived cell line
4
keratinocyte
4
luminal epithelial cell of mammary gland
4
megakaryocyte
4
natural killer cell
4
regulatory T cell
4
smooth muscle cell of the esophagus
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
3
activated CD4-positive, alpha-beta T cell
3
adipose tissue
3
basal cell
3
cardiomyocytes (cardiac muscle cell)
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
heart left ventricle
3
mesenchymal stem cell
3
mesothelial cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreas
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
plasmacytoid dendritic cell
3
psoas muscle
3
schwann cell
3
type B pancreatic cell
2
HCT116
2
HepG2
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
activated CD8-positive, alpha-beta T cell
2
adipose-derived stem cell
2
alveolar macrophage
2
aorta
2
aortic endothelial cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
colon goblet cell
2
conventional dendritic cell
2
coronary artery
2
differentiating adipose-derived stem cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
heart
2
heart right ventricle
2
intestinal tuft cell
2
leukocyte
2
luteal cell
2
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
2
mast cell
2
mature NK T cell
2
mature natural killer cell
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive regulatory T cell
2
naive t cell
2
natural killer cell mediated cytotoxicity
2
neuron
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
osteoblast
2
paneth cell
2
parietal cell
2
peptic cell
2
regular atrial cardiac myocyte
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
spleen
2
stellate neuron
2
stomach neuroendocrine cell
2
stromal cell
2
subcutaneous adipose tissue
2
thymus
2
thyroid follicular cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
Ammon's horn
1
B-lymphoblastoid cell line
1
CD4-positive helper T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
adrenal gland
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
bladder (urinary bladder)
1
cardiac muscle cell
1
cardiac precursors
1
cardiac precursors (cardiac muscle cell)
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
distal epiphysis
Organ
3
connective tissue
Life stage
1
unknown
Date released
1
February, 2024
1
March, 2020
1
May, 2022
Software used
2
macs
1
nospecificsoft_customcode
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
annotation_type_category!
DNase-seq
biosample_term_name!
thoracic aorta
Showing 3 of 3 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP