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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
0
accessible chromatin
Annotation Category
2
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
H3K27ac ChIP-Seq
1
pCHi-C
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
stem cell
Biosample term
54
HeLa-S3
38
H1-hESC
22
K562
20
heart
19
HFFc6
19
stomach
18
A549
17
lung
16
brain
16
muscle of arm
16
small intestine
15
adrenal gland
14
kidney
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
thymus
12
B cell
11
pericyte cell
11
right kidney
11
right lung
10
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
endothelial cell
7
heart left ventricle
7
lymphocyte
7
psoas muscle
7
smooth muscle cell
7
spinal cord
7
spleen
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
regulatory T cell
6
sigmoid colon
5
CD8-positive, alpha-beta T cell
5
MCF-7
5
T cell
5
T-helper 1 cell
5
T-helper 17 cell
5
T-helper 2 cell
5
heart right ventricle
5
neural progenitor cell
5
ovary
5
trophoblast cell
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
aorta
4
body of pancreas
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of cardiac tissue
4
foreskin keratinocyte
4
gastrocnemius medialis
4
iPSC derived cell line
4
keratinocyte
4
macrophage
4
mammary gland epithelial cell
4
memory B cell
monocyte
4
muscle of trunk
4
naive B cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
pancreas
4
pancreatic delta cell
4
thyroid gland
4
transverse colon
3
CD4-positive, alpha-beta T cell
3
HCT116
3
Peyer's patch
3
astrocyte
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorion membrane
3
endometrium adenocarcinoma
3
esophagus
3
fibroblast of dermis
3
fibroblast of lung
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
islet of Langerhans
3
layer of hippocampus
3
left renal cortex interstitium
3
luminal epithelial cell of mammary gland
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic alpha cell
3
pancreatic beta cell
3
retina
3
right renal cortex interstitium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
tibial nerve
3
trophoblast
3
type II pneumocyte
3
upper lobe of left lung
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
HepG2
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T follicular helper cell
2
T47D
2
activated CD4-positive, alpha-beta T cell
2
adipocyte
2
angular gyrus
2
ascending aorta
2
basal cell
2
blood vessel smooth muscle cell
2
breast epithelium
2
bronchial epithelial cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
cerebellum
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colonic mucosa
2
coronary artery
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endodermal cell
2
endothelial cell of lymphatic vessel
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
extracellular matrix secreting cell
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
frontal cortex
2
gabaergic neuron
2
gamma-delta T cell
2
glutamatergic neuron
2
kidney tubule cell
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesendoderm
2
midbrain
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive regulatory T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
omental fat pad
2
pancreatic A cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
plasma cell
2
plasmacytoid dendritic cell
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
right renal pelvis
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
substantia nigra
Life stage
1
embryonic
Date released
1
March, 2020
1
September, 2022
Software used
macs
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type_category!
H3K27ac ChIP-Seq
biosample_term_name!
monocyte
software_used.software.name!
macs
Showing 2 of 2 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP