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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
differential activity
3
target gene predictions
2
candidate regulatory elements
2
gene expression
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
3
DNase-seq
snATAC-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
2
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
tissue
1
stem cell
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
20
A549
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
monocyte
18
adrenal gland
18
brain
18
small intestine
17
lung
17
muscle of arm
16
muscle of leg
16
placenta
15
large intestine
15
neural progenitor cell
15
thymus
14
B cell
14
common myeloid progenitor, CD34-positive
14
liver
13
left lung
13
muscle of back
12
right lung
11
hematopoietic multipotent progenitor cell
11
hepatocyte
11
renal pelvis
11
right kidney
10
adipocyte
10
adipose tissue
10
heart left ventricle
10
pancreas
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
10
spleen
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
GM12878
9
left kidney
9
psoas muscle
9
retinal pigment epithelial cell
8
H9
8
endothelial cell
8
sigmoid colon
8
trophoblast cell
7
CD8-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
embryonic stem cell
7
islet of Langerhans
7
lymphocyte
7
osteoblast
7
ovary
7
regulatory T cell
7
smooth muscle cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
coronary artery
6
dendritic cell
6
endothelial cell of umbilical vein
6
fibroblast of cardiac tissue
6
gastrocnemius medialis
6
glutamatergic neuron
6
heart right ventricle
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
pancreatic ductal cell
6
thyroid gland
6
tibial nerve
6
transverse colon
5
HUES8
5
HepG2
5
T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
astrocyte
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
foreskin keratinocyte
5
keratinocyte
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
muscle of trunk
5
right atrium auricular region
5
skeletal muscle myoblast
5
skin fibroblast
5
tibial artery
4
Ammon's horn
4
CD4-positive helper T cell
4
CyT49
4
Peyer's patch
4
aorta
4
breast epithelium
4
cardiac muscle cell
4
chorion membrane
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
epithelial cell of prostate
4
fibroblast
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
frontal cortex
4
glomerular visceral epithelial cell
4
iPSC derived cell line
4
kidney tubule cell
4
macrophage
4
mesendoderm
4
omental fat pad
4
pancreatic A cell
4
pancreatic acinar cell
4
testis
4
trophoblast
4
type B pancreatic cell
4
upper lobe of left lung
3
cardiac fibroblast
3
CD4-positive, alpha-beta T cell
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
ascending aorta
bipolar neuron
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
choroid plexus epithelial cell
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
luminal epithelial cell of mammary gland
3
medulla oblongata
3
memory B cell
3
midbrain
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
urinary bladder
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
Organ
2
connective tissue
2
pancreas
Life stage
1
embryonic
Date released
2
February, 2024
1
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
3
macs
1
abc
1
nospecificsoft_customcode
1
r
Lab
3
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type_category!
snATAC-seq
biosample_term_name!
bipolar neuron
Showing 6 of 6 results
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Download
FileSet
DSR242BFD
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Quiescent Stellate
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR972BOL
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Active Stellate
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP