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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
3
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
24
stomach
23
heart
20
A549
19
CD14-positive monocyte
18
brain
17
adrenal gland
17
kidney
17
muscle of arm
17
small intestine
16
lung
16
muscle of leg
16
placenta
15
large intestine
14
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
13
thymus
12
right lung
11
B cell
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
9
CD4-positive, alpha-beta memory T cell
9
left kidney
liver
8
K562
8
spleen
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
adipocyte
7
adipose tissue
7
heart left ventricle
7
pancreas
7
sigmoid colon
6
dendritic cell
6
gastrocnemius medialis
6
mononuclear cell
6
ovary
6
psoas muscle
6
thyroid gland
6
transverse colon
5
T cell
5
body of pancreas
5
caudate nucleus
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
hepatocyte
5
muscle of trunk
5
natural killer cell
5
osteoblast
5
regulatory T cell
5
retina
5
skeletal muscle myoblast
5
tibial nerve
4
HeLa-S3
4
Peyer's patch
4
T-helper 1 cell
4
breast epithelium
4
chorion membrane
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
frontal cortex
4
heart right ventricle
4
kidney tubule cell
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
neural progenitor cell
4
right atrium auricular region
4
skin fibroblast
4
testis
4
tibial artery
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
GM12878
3
H1-hESC
3
H7-hESC
3
HAP-1
3
HT-29
3
HepG2
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
ascending aorta
bipolar neuron
3
bronchial epithelial cell
3
cardiac muscle cell
3
cerebellum
3
choroid plexus epithelial cell
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesendoderm
3
midbrain
3
monocyte
3
naive T cell
3
neurosphere
3
occipital lobe
3
omental fat pad
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
superior temporal gyrus
3
tongue
3
trophoblast
3
urinary bladder
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM18507
2
GM19240
2
GM23248
2
H4
2
H9
2
HCT-116 cell
2
HEK293
2
HL-60
2
HUES6
2
HuH-7
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
M059J
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
2
NCCIT cell
2
NCI-H226 cell
2
NT2-D1 cell
2
PC-3
2
Panc1
2
RCC 7860
2
RPMI7951
Life stage
1
embryonic
Date released
1
June, 2020
1
May, 2021
1
September, 2022
Software used
1
abc
1
macs
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_term_name!
bipolar neuron
liver
Showing 3 of 3 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP