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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
Fine-mapped variants
2
accessible chromatin
2
candidate regulatory elements
2
chromatin state
2
eQTL
2
gene expression
2
target gene predictions
1
variant allelic effects
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
2
ChIP-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
0
primary cell
Biosample term
26
retina
25
heart
24
kidney
24
stomach
23
endothelial cell
20
fibroblast
20
monocyte
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
18
adrenal gland
18
brain
18
small intestine
17
lung
17
muscle of arm
16
B cell
16
muscle of leg
16
placenta
15
large intestine
15
macrophage
15
smooth muscle cell
15
thymus
14
common myeloid progenitor, CD34-positive
14
liver
13
left lung
13
muscle of back
12
astrocyte
12
excitatory neuron
12
right lung
11
hepatocyte
11
pancreatic beta cell
11
pancreatic ductal cell
11
renal pelvis
11
right kidney
10
T cell
10
adipose tissue
10
heart left ventricle
10
pancreas
10
pancreatic acinar cell
10
pancreatic alpha cell
10
renal cortex interstitium
10
spleen
9
CD4-positive, alpha-beta memory T cell
9
CD8-positive, alpha-beta T cell
9
left kidney
9
pancreatic delta cell
9
psoas muscle
9
regulatory T cell
9
spinal cord
8
glutamatergic neuron
8
islet of Langerhans
8
natural killer cell
8
sigmoid colon
7
CD8-positive, alpha-beta memory T cell
7
erythroblast
7
keratinocyte
7
osteoblast
7
ovary
7
skeletal muscle satellite cell
6
T-helper 1 cell
6
colon epithelial cell
6
coronary artery
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast of cardiac tissue
6
gastrocnemius medialis
6
heart right ventricle
6
memory B cell
6
mononuclear cell
6
olfactory receptor cell
6
thyroid gland
6
tibial nerve
6
transverse colon
6
trophoblast cell
6
type II pneumocyte
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
caudate nucleus
5
cortical cell of adrenal gland
5
gabaergic neuron
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
muscle of trunk
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle fiber
5
skin fibroblast
5
tibial artery
4
Ammon's horn
4
CD4-positive, alpha-beta T cell
4
Peyer's patch
4
aorta
4
blood vessel smooth muscle cell
4
breast epithelium
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
hepatic stellate cell
4
kidney tubule cell
4
megakaryocyte
4
omental fat pad
4
pancreatic A cell
4
retinal pigment epithelial cell
4
skeletal muscle myoblast
4
smooth muscle cell of the esophagus
4
testis
4
trophoblast
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
4
upper lobe of left lung
3
cardiac fibroblast
3
CD4-positive helper T cell
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
bronchial epithelial cell
3
cerebellum
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
epithelial cell of prostate
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
foreskin fibroblast
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesothelial cell
3
midbrain
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
plasmacytoid dendritic cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle tissue
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
urinary bladder
3
uterus
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
Muller cell
2
T follicular helper cell
2
T-cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipocyte
2
alveolar macrophage
2
angular gyrus
2
aortic endothelial cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell of epidermis
2
bone marrow cell
2
brain microvascular endothelial cell
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colon goblet cell
2
colonic mucosa
2
conventional dendritic cell
Organ
4
brain
Life stage
3
adult
Date released
2
September, 2022
1
January, 2020
1
June, 2020
Software used
2
macs
2
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
assembly!
hg18
Showing 4 of 4 results
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Download
FileSet
DSR540WDY
released
Annotation file set
: Target gene predictions for BSS00371 frontal cortex from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR897QIE
released
Annotation file set
: Target gene predictions for BSS00369 frontal cortex from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR744GOP
released
Annotation file set
: Accessible chromatin annotation for Neural Cerebrum frontal OC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR423PZC
released
Annotation file set
: Accessible chromatin annotation of brain frontal cortex from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP