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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
Biosample term
15
CD14-positive monocyte
10
pituitary stalk
7
kidney
6
dendritic cell
6
endothelial cell
6
hepatocyte
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
pancreatic ductal cell
5
adipocyte
5
macrophage
5
pancreatic acinar cell
5
pancreatic stellate cell
4
CD8-positive, alpha-beta T cell
4
endothelial cell of hepatic sinusoid
4
natural killer cell
3
CD4-positive helper T cell
3
monocyte
3
pancreatic polypeptide-secreting cell
2
B cell
2
BJAB cell
2
Jurkat
2
MCF 10A cell
2
T cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
capillary endothelial cell
2
conventional dendritic cell
2
extracellular matrix secreting cell
2
fibroblast
2
liver
2
megakaryocyte
2
memory B cell
2
mesenchymal stem cell
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
pancreatic A cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
skeletal muscle fiber
2
smooth muscle cell
2
stellate neuron
2
stomach
2
trophoblast cell
2
type B pancreatic cell
1
A549
1
A673
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
Schwann cell
1
adipose tissue
1
astrocyte
1
basal cell
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac muscle cell
1
cardiac ventricle
1
cell
1
ciliated cell
1
club cell
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
erythroblast
1
erythrocyte
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastrocnemius medialis
1
glial cell
1
glomerular visceral epithelial cell
1
iPS DF 19.11
1
induced pluripotent stem cell
1
keratinocyte
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
large intestine
1
leukocyte
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
megakaryocyte-erythroid progenitor cell
1
mesendoderm
1
muscle of leg
1
muscle of trunk
1
myofibroblast cell
1
myotube
1
neural cell
1
neuroendocrine cell
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
osteoblast
1
ovary
1
pancreas
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
placenta
1
proximal tubule cells with injury markers
1
psoas muscle
1
renal intercalated cell
1
renal principal cell
1
sigmoid colon
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
thymus
1
thyroid gland
1
tissue-resident macrophage
1
transverse colon
1
type I muscle cell
1
type I pneumocyte
1
type II muscle cell
1
type II pneumocyte
1
undifferentiated ESC (H9 cell line)
1
uterus
1
white adipose tissue
Date released
2
January, 2021
1
May, 2021
Software used
1
abc
1
cicero
1
macs
Lab
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Jesse Engreitz, Stanford University
Project
2
T1D
1
AMP
ENCODE
RFA
2
T1D
1
AMP
award.project!
ENCODE
lab.title!
AMP-T2D consortium
Showing 3 of 3 results
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Download
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR234HXR
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D