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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
gene expression
7
candidate regulatory elements
5
accessible chromatin
2
binding sites
2
caQTL
2
chromatin state
2
target gene predictions
2
variant allelic effects
1
eQTL
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
3
snATAC-seq
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
Available data
7
bed bed3+
3
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
6
primary cell
1
tissue
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
20
A549
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
monocyte
18
adrenal gland
18
brain
18
small intestine
17
lung
17
muscle of arm
16
muscle of leg
16
placenta
15
large intestine
15
neural progenitor cell
15
thymus
14
B cell
14
common myeloid progenitor, CD34-positive
14
liver
13
left lung
13
muscle of back
12
right lung
11
adipocyte
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
adipose tissue
10
heart left ventricle
10
hepatocyte
10
pancreas
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
10
spleen
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
GM12878
9
left kidney
9
psoas muscle
9
retinal pigment epithelial cell
8
H9
8
sigmoid colon
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
embryonic stem cell
7
islet of Langerhans
7
lymphocyte
7
mesenchymal stem cell
7
osteoblast
7
ovary
7
regulatory T cell
6
CD8-positive, alpha-beta T cell
6
SGBS preadipocytes
6
T cell
6
T-helper 1 cell
6
coronary artery
6
dendritic cell
6
endothelial cell of umbilical vein
6
gastrocnemius medialis
6
heart right ventricle
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
pancreatic ductal cell
6
thyroid gland
6
tibial nerve
6
transverse colon
5
HUES8
5
HepG2
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
endothelial cell
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
muscle of trunk
5
pancreatic beta cell
5
right atrium auricular region
5
skeletal muscle myoblast
5
tibial artery
4
Ammon's horn
4
CyT49
4
Peyer's patch
4
aorta
4
breast epithelium
4
cardiac muscle cell
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
frontal cortex
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
iPSC derived cell line
4
kidney tubule cell
4
macrophage
4
mammary gland epithelial cell
4
mesendoderm
4
omental fat pad
4
pancreatic acinar cell
4
pancreatic alpha cell
4
skin fibroblast
4
smooth muscle cell
4
testis
4
trophoblast
4
upper lobe of left lung
3
cardiac fibroblast
3
CD4-positive helper T cell
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
ascending aorta
3
astrocyte
3
bipolar neuron
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
choroid plexus epithelial cell
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
glomerular endothelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
midbrain
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
occipital lobe
3
pancreatic delta cell
3
pancreatic stellate cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
urinary bladder
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive, alpha-beta T cell
2
CMK
Organ
7
epithelium
2
mammary gland
Life stage
4
adult
1
unknown
Date released
2
February, 2024
2
May, 2022
2
September, 2022
1
August, 2021
Software used
5
macs
2
r
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
16
ENCODE
7
AMP
2
T1D
RFA
4
AMP
3
AMP2
Showing 7 of 7 results
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR201VSW
released
Annotation file set
: Target gene predictions for BSS01341 myoepithelial cell of mammary gland from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR160KCD
released
Annotation file set
: Target gene predictions for BSS01340 myoepithelial cell of mammary gland from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP