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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
5
accessible chromatin
3
histone modifications
2
binding sites
2
candidate regulatory elements
2
target gene predictions
1
caQTL
1
eQTL
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
4
DNase-seq
2
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
2
cell line
2
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
52
HeLa-S3
39
H1-hESC
23
retina
20
pigmented layer of retina
19
HFFc6
19
monocyte
18
K562
15
CD14-positive monocyte
11
neural progenitor cell
10
kidney
10
pituitary stalk
9
EndoC_BH1
9
adipocyte
8
GM12878
8
hepatocyte
8
pancreas
8
retinal pigment epithelial cell
7
H9
7
embryonic stem cell
7
islet of Langerhans
7
liver
6
B cell
6
CD8-positive, alpha-beta T cell
6
SGBS preadipocytes
6
dendritic cell
6
heart
6
lymphocyte
6
olfactory receptor cell
6
osteoblast
6
pancreatic ductal cell
5
HUES8
5
chondrocyte
5
endothelial cell
5
heart left ventricle
5
mesenchymal stem cell
5
pancreatic beta cell
5
psoas muscle
5
stomach
4
CyT49
4
HepG2
4
adipose tissue
4
adrenal gland
4
coronary artery
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
glutamatergic neuron
4
iPSC derived cell line
4
macrophage
4
pancreatic acinar cell
4
pancreatic alpha cell
4
regulatory T cell
4
spleen
4
thymus
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive helper T cell
3
Jurkat
3
T-helper 1 cell
3
U937
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
glomerular visceral epithelial cell
3
heart right ventricle
3
mesendoderm
3
muscle of leg
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
ovary
3
pancreatic delta cell
3
pancreatic stellate cell
3
right atrium auricular region
3
sigmoid colon
3
skeletal muscle myoblast
3
small intestine
3
smooth muscle cell
3
spinal cord
3
tibial artery
3
tibial nerve
3
trophoblast cell
2
A549
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
2
IMR-90
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MCF 10A cell
2
MCF-7
2
MDA-MB-231 cell
2
MM.1S
2
NCCIT cell
2
OCI-LY7
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
T cell
2
T follicular helper cell
2
T-cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aorta
2
aortic endothelial cell
2
astrocyte
2
bipolar neuron
2
bone marrow cell
2
brain
2
brain pericyte
2
breast epithelium
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epithelial cell of prostate
2
erythroblast
2
erythroid cell
2
fibroblast
2
fibroblast cell line
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
frontal cortex
2
gamma-delta T cell
2
gastrocnemius medialis
2
globus pallidus
2
glomerular endothelial cell
2
hepatic stellate cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
large intestine
2
leukocyte
2
lymphocyte of B lineage (iPSC)
2
mammary epithelial cell
2
mature natural killer cell
2
medulla oblongata
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
naive regulatory T cell
2
neuronal stem cell
2
occipital lobe
2
omental fat pad
2
pancreatic A cell
2
placenta
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
skin fibroblast
2
smooth muscle cell of the coronary artery
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
thyroid gland
2
transverse colon
2
trophoblast
2
type B pancreatic cell
2
type I muscle cell
2
type II muscle cell
2
uterus
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A673
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-lymphoblastoid cell line
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
Organ
7
connective tissue
2
heart
Life stage
1
unknown
Date released
3
June, 2020
1
February, 2024
1
March, 2020
1
May, 2021
1
May, 2022
Software used
5
macs
r
1
abc
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
7
AMP
3
ENCODE
RFA
6
AMP
1
AMP2
software_used.software.name!
r
Showing 7 of 7 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR025CSW
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular HCF from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426JNG
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular HCFaa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP