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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
3
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
24
K562
24
heart
24
stomach
20
A549
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
monocyte
18
brain
17
adrenal gland
17
kidney
17
muscle of arm
17
small intestine
16
lung
16
muscle of leg
16
placenta
15
large intestine
14
B cell
14
common myeloid progenitor, CD34-positive
14
neural progenitor cell
14
thymus
13
left lung
13
muscle of back
12
liver
12
right lung
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
adipocyte
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
adipose tissue
9
left kidney
9
retinal pigment epithelial cell
9
spleen
8
EndoC_BH1
8
H9
8
heart left ventricle
8
pancreas
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
islet of Langerhans
7
lymphocyte
7
osteoblast
7
regulatory T cell
7
sigmoid colon
6
CD8-positive, alpha-beta T cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
coronary artery
6
dendritic cell
6
gastrocnemius medialis
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
ovary
6
pancreatic ductal cell
6
psoas muscle
6
thyroid gland
6
tibial nerve
6
transverse colon
5
HUES8
5
T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
hepatocyte
5
mesenchymal stem cell
5
muscle of trunk
5
pancreatic beta cell
5
right atrium auricular region
5
skeletal muscle myoblast
5
tibial artery
4
CyT49
4
HepG2
4
Peyer's patch
4
breast epithelium
4
cardiac muscle cell
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
frontal cortex
4
glutamatergic neuron
4
heart right ventricle
4
iPSC derived cell line
4
kidney tubule cell
4
mammary gland epithelial cell
4
omental fat pad
4
pancreatic acinar cell
4
pancreatic alpha cell
4
skin fibroblast
4
testis
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive helper T cell
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
ascending aorta
3
astrocyte
3
bipolar neuron
3
bronchial epithelial cell
3
cerebellum
3
choroid plexus epithelial cell
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
macrophage
3
medulla oblongata
3
mesendoderm
3
midbrain
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
occipital lobe
3
pancreatic delta cell
3
pancreatic stellate cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
trophoblast
3
urinary bladder
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive, alpha-beta T cell
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
Life stage
1
embryonic
Date released
1
June, 2020
March, 2020
1
May, 2021
1
September, 2022
Software used
1
abc
1
macs
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_term_name!
HCT116
month_released!
March, 2020
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP