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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
4
accessible chromatin
3
binding sites
3
target gene predictions
2
histone modifications
1
caQTL
1
chromatin state
1
eQTL
1
gene expression
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
4
DNase-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
2
snATAC-seq
1
pCHi-C
Available data
7
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
2
cell line
2
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
52
HeLa-S3
39
H1-hESC
23
endothelial cell
23
retina
21
monocyte
20
fibroblast
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
18
K562
17
macrophage
15
CD14-positive monocyte
15
smooth muscle cell
13
excitatory neuron
11
astrocyte
11
neural progenitor cell
11
pancreatic ductal cell
10
B cell
10
CD8-positive, alpha-beta T cell
10
adipocyte
10
hepatocyte
10
kidney
10
pancreatic acinar cell
10
pancreatic beta cell
10
pituitary stalk
9
EndoC_BH1
9
pancreatic alpha cell
9
retinal pigment epithelial cell
8
GM12878
8
glutamatergic neuron
8
pancreas
7
H9
7
T cell
7
embryonic stem cell
7
erythroblast
7
islet of Langerhans
7
liver
7
pancreatic delta cell
6
SGBS preadipocytes
6
colon epithelial cell
6
dendritic cell
endothelial cell of hepatic sinusoid
6
heart
6
lymphocyte
6
memory B cell
6
natural killer cell
6
olfactory receptor cell
6
osteoblast
6
regulatory T cell
6
skeletal muscle satellite cell
6
type II pneumocyte
5
HUES8
5
chondrocyte
5
cortical cell of adrenal gland
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
heart left ventricle
5
inhibitory neuron
5
keratinocyte
5
mesenchymal stem cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
psoas muscle
5
skeletal muscle fiber
5
stomach
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
adipose tissue
4
adrenal gland
4
blood vessel smooth muscle cell
4
coronary artery
4
endothelial cell of lymphatic vessel
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
megakaryocyte
4
pancreatic A cell
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
spleen
4
thymus
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
3
cardiac fibroblast
3
Ammon's horn
3
Jurkat
3
T-helper 1 cell
3
U937
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
glomerular visceral epithelial cell
3
heart right ventricle
3
hepatic stellate cell
3
mammary gland epithelial cell
3
mesendoderm
3
mesothelial cell
3
muscle of leg
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
ovary
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
plasmacytoid dendritic cell
3
right atrium auricular region
3
schwann cell
3
sigmoid colon
3
skeletal muscle myoblast
3
small intestine
3
spinal cord
3
tibial artery
3
tibial nerve
3
trophoblast cell
2
A549
2
BJAB cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
2
IMR-90
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MCF 10A cell
2
MCF-7
2
MDA-MB-231 cell
2
MM.1S
2
Muller cell
2
NCCIT cell
2
OCI-LY7
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
T follicular helper cell
2
T-cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
alveolar macrophage
2
aorta
2
basal cell of epidermis
2
bipolar neuron
2
bone marrow cell
2
brain
2
brain pericyte
2
breast epithelium
2
capillary endothelial cell
2
cardiac endothelial cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
colon goblet cell
2
conventional dendritic cell
2
differentiating adipose-derived stem cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast cell line
2
foreskin fibroblast
2
foveolar cell of stomach
2
frontal cortex
2
gamma-delta T cell
2
gastrocnemius medialis
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
large intestine
2
leukocyte
2
luteal cell
2
lymphocyte of B lineage (iPSC)
Organ
5
connective tissue
2
lung
Life stage
1
unknown
Date released
September, 2022
2
June, 2020
2
May, 2021
1
February, 2024
1
March, 2020
1
May, 2022
Software used
4
macs
2
abc
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
endothelial cell of hepatic sinusoid
month_released!
September, 2022
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR008HJP
released
Annotation file set
: Accessible chromatin annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP