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Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
4
accessible chromatin
4
target gene predictions
3
gene expression
1
chromatin state
Annotation Category
4
Target gene links
4
cis-regulatory elements
Annotation type Category
5
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
snATAC-seq
1
pCHi-C
Available data
8
bed bed3+
4
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
8
primary cell
in vitro differentiated cells
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
22
endothelial cell
20
A549
20
fibroblast
20
monocyte
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
brain
18
small intestine
17
lung
17
muscle of arm
16
B cell
16
macrophage
16
muscle of leg
16
placenta
15
large intestine
15
smooth muscle cell
15
thymus
14
common myeloid progenitor, CD34-positive
14
liver
13
left lung
13
muscle of back
12
astrocyte
12
excitatory neuron
12
right lung
11
hepatocyte
11
renal pelvis
11
right kidney
10
T cell
10
adipose tissue
10
heart left ventricle
10
pancreas
10
pancreatic ductal cell
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
spleen
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
GM12878
9
left kidney
9
pancreatic acinar cell
9
psoas muscle
8
CD8-positive, alpha-beta T cell
8
H9
8
fibroblast of cardiac tissue
8
glutamatergic neuron
8
islet of Langerhans
8
pancreatic beta cell
8
regulatory T cell
8
sigmoid colon
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
colon epithelial cell
7
erythroblast
7
keratinocyte
7
lymphocyte
7
natural killer cell
7
osteoblast
7
ovary
7
pancreatic alpha cell
7
skeletal muscle satellite cell
6
T-helper 1 cell
6
coronary artery
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
gastrocnemius medialis
6
heart right ventricle
6
mononuclear cell
6
olfactory receptor cell
6
pancreatic delta cell
6
thyroid gland
6
tibial nerve
6
transverse colon
6
trophoblast cell
6
type II pneumocyte
5
HUES8
5
HepG2
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
caudate nucleus
5
cortical cell of adrenal gland
5
gabaergic neuron
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
memory B cell
5
muscle of trunk
5
right atrium auricular region
5
skeletal muscle fiber
5
skin fibroblast
5
tibial artery
4
Ammon's horn
4
CD4-positive, alpha-beta T cell
4
CyT49
4
Peyer's patch
4
aorta
4
blood vessel smooth muscle cell
4
breast epithelium
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
foreskin keratinocyte
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iPSC derived cell line
4
kidney tubule cell
4
naive B cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
omental fat pad
4
pancreatic A cell
4
pancreatic stellate cell
4
retinal pigment epithelial cell
4
skeletal muscle myoblast
4
smooth muscle cell of the esophagus
4
testis
4
trophoblast
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
4
upper lobe of left lung
3
cardiac fibroblast
3
CD4-positive helper T cell
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
ascending aorta
3
basal cell
3
bronchial epithelial cell
3
cerebellum
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
megakaryocyte
3
mesenchymal stem cell
3
mesothelial cell
3
midbrain
3
naive T cell
3
neurosphere
3
neutrophil
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
plasma cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
Date released
3
May, 2020
2
May, 2021
2
November, 2021
1
January, 2021
Software used
3
abc
2
macs
1
chicago
cicero
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
2
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
5
AMP
2
ENCODE
1
T1D
RFA
5
AMP
2
ENCODE3
1
T1D
biosample_term_name!
spleen
biosample_type!
in vitro differentiated cells
software_used.software.name!
cicero
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP