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Schema
Citing CMDGA
Clear Filters
Annotation type
21
candidate regulatory elements
3
target gene predictions
2
binding sites
2
histone modifications
1
eQTL
1
gene expression
0
accessible chromatin
Annotation Category
3
Target gene links
Annotation type Category
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
HiC
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
cell line
Biosample term
52
HeLa-S3
38
H1-hESC
23
endothelial cell
22
retina
20
fibroblast
20
pigmented layer of retina
19
HFFc6
19
monocyte
19
pericyte cell
17
K562
16
macrophage
15
CD14-positive monocyte
15
smooth muscle cell
13
excitatory neuron
11
astrocyte
11
neural progenitor cell
10
pancreatic acinar cell
10
pancreatic beta cell
10
pancreatic ductal cell
10
pituitary stalk
9
CD8-positive, alpha-beta T cell
9
EndoC_BH1
9
adipocyte
9
hepatocyte
9
kidney
9
pancreatic alpha cell
8
B cell
8
glutamatergic neuron
8
retinal pigment epithelial cell
7
GM12878
7
H9
7
embryonic stem cell
7
erythroblast
7
pancreatic delta cell
6
T cell
6
colon epithelial cell
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
islet of Langerhans
6
liver
6
lymphocyte
6
memory B cell
6
olfactory receptor cell
6
pancreas
6
skeletal muscle satellite cell
6
type II pneumocyte
5
SGBS preadipocytes
5
chondrocyte
5
cortical cell of adrenal gland
5
gabaergic neuron
5
heart left ventricle
5
inhibitory neuron
5
keratinocyte
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
natural killer cell
5
pancreatic stellate cell
5
skeletal muscle fiber
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
adipose tissue
4
blood vessel smooth muscle cell
4
coronary artery
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
heart
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
megakaryocyte
4
mesenchymal stem cell
4
osteoblast
4
pancreatic A cell
4
psoas muscle
4
regulatory T cell
4
smooth muscle cell of the esophagus
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
3
cardiac fibroblast
3
CD4-positive helper T cell
3
HepG2
3
activated CD4-positive, alpha-beta T cell
3
adrenal gland
3
basal cell
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
ciliated cell
3
club cell
3
endocardial cell
3
endothelial cell of umbilical vein
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
heart right ventricle
3
mesothelial cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
plasmacytoid dendritic cell
3
schwann cell
3
spleen
3
thymus
2
Ammon's horn
2
BJAB cell
2
HCT116
2
Jurkat
2
MCF 10A cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
activated CD8-positive, alpha-beta T cell
2
adipose-derived stem cell
2
alveolar macrophage
2
aorta
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
colon goblet cell
2
conventional dendritic cell
2
differentiating adipose-derived stem cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
glomerular visceral epithelial cell
2
granular cell of epidermis
2
hepatic stellate cell
2
intestinal tuft cell
2
leukocyte
2
luteal cell
2
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
2
mast cell
2
mature NK T cell
2
mature natural killer cell
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesendoderm
2
microglial cell
2
muscle of leg
2
myoepithelial cell
2
naive regulatory T cell
2
naive t cell
2
natural killer cell mediated cytotoxicity
2
neuron
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
omental fat pad
2
ovary
2
paneth cell
2
parietal cell
2
peptic cell
2
regular atrial cardiac myocyte
2
respiratory goblet cell
2
right atrium auricular region
2
sigmoid colon
2
skeletal muscle fibroblast
2
skeletal muscle myoblast
2
skin fibroblast
2
small intestine
2
small intestine goblet cell
2
smooth muscle cell of the coronary artery
2
stellate neuron
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
2
subcutaneous adipose tissue
2
thyroid follicular cell
2
tibial artery
2
tibial nerve
2
trophoblast cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
hindlimb muscle
1
A549
1
A673
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
Organ
2
stomach
1
blood
1
bodily fluid
Date released
September, 2022
June, 2020
2
May, 2021
1
February, 2024
Software used
2
abc
Lab
2
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
June, 2020
September, 2022
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR353VNN
released
Annotation file set
: Target gene predictions from Hi-C on lympoblastoid cell lines from 1000G individuals. GM19240
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR408DBU
released
Annotation file set
: enhancer-gene predicton of stomach_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR821UNZ
released
Annotation file set
: enhancer-gene predicton of stomach-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP