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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
4
accessible chromatin
4
chromatin state
4
target gene predictions
2
binding sites
2
histone modifications
1
caQTL
1
eQTL
1
gene expression
Annotation Category
4
Target gene links
4
cis-regulatory elements
Annotation type Category
5
DNase-seq
3
ChIP-seq
2
snATAC-seq
1
pCHi-C
Available data
8
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
cell line
2
primary cell
1
stem cell
Biosample term
54
HeLa-S3
39
H1-hESC
26
retina
25
heart
24
kidney
23
K562
23
endothelial cell
22
stomach
20
fibroblast
20
monocyte
20
pericyte cell
20
pigmented layer of retina
19
A549
19
HFFc6
18
brain
17
B cell
17
lung
17
muscle of arm
17
small intestine
16
adrenal gland
16
macrophage
16
smooth muscle cell
15
muscle of leg
15
neural progenitor cell
15
placenta
14
large intestine
14
thymus
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
left lung
13
liver
13
muscle of back
12
right lung
11
T cell
11
astrocyte
11
hematopoietic multipotent progenitor cell
11
hepatocyte
11
pancreatic beta cell
11
renal pelvis
11
right kidney
10
heart left ventricle
10
pancreatic alpha cell
10
pancreatic ductal cell
10
renal cortex interstitium
10
retinal pigment epithelial cell
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
adipose tissue
9
left kidney
9
pancreas
9
pancreatic acinar cell
9
pancreatic delta cell
9
regulatory T cell
9
spinal cord
9
spleen
8
CD8-positive, alpha-beta T cell
8
GM12878
8
adipocyte
8
fibroblast of cardiac tissue
8
glutamatergic neuron
8
islet of Langerhans
8
natural killer cell
8
psoas muscle
7
CD8-positive, alpha-beta memory T cell
7
H9
7
colon epithelial cell
7
embryonic stem cell
7
lymphocyte
7
sigmoid colon
7
skeletal muscle satellite cell
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
endothelial cell of hepatic sinusoid
6
erythroblast
6
heart right ventricle
6
keratinocyte
6
mammary gland epithelial cell
6
memory B cell
6
mesenchymal stem cell
6
mononuclear cell
6
olfactory receptor cell
6
osteoblast
6
ovary
6
skin fibroblast
6
tibial nerve
6
trophoblast cell
6
type II pneumocyte
5
HUES8
5
T-helper 17 cell
5
T-helper 2 cell
5
caudate nucleus
5
chondrocyte
5
coronary artery
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
foreskin keratinocyte
5
gabaergic neuron
5
gastrocnemius medialis
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle fiber
5
thyroid gland
5
tibial artery
5
transverse colon
4
Ammon's horn
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Peyer's patch
4
aorta
4
blood vessel smooth muscle cell
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iPSC derived cell line
4
kidney tubule cell
4
megakaryocyte
4
muscle of trunk
4
omental fat pad
4
skeletal muscle myoblast
4
smooth muscle cell of the esophagus
4
testis
4
trophoblast
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
4
upper lobe of left lung
3
cardiac fibroblast
3
GM18507
3
GM19240
3
HCT116
3
NAMALWA cell
3
SK-N-DZ
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
epithelial cell of prostate
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesendoderm
3
mesothelial cell
3
midbrain
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
neutrophil
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
plasmacytoid dendritic cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle tissue
Disease term
1
colorectal adenocarcinoma
Organ
6
connective tissue
2
intestine
2
large intestine
Life stage
2
adult
1
embryonic
1
unknown
Date released
3
September, 2022
2
June, 2020
1
February, 2024
1
March, 2020
1
May, 2022
Software used
4
macs
3
r
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
lab.title!
Jesse Engreitz, Stanford University
Showing 8 of 8 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR208YEV
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP