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Schema
Citing CMDGA
Clear Filters
Annotation type
9
candidate regulatory elements
6
target gene predictions
5
chromatin state
3
binding sites
2
histone modifications
1
accessible chromatin
Annotation Category
6
Target gene links
1
cis-regulatory elements
Annotation type Category
7
DNase-seq
5
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
20
A549
20
pigmented layer of retina
19
HFFc6
18
adrenal gland
18
brain
18
small intestine
17
lung
17
muscle of arm
16
muscle of leg
16
placenta
15
large intestine
15
neural progenitor cell
15
thymus
14
liver
13
left lung
13
muscle of back
12
right lung
11
hematopoietic multipotent progenitor cell
11
right kidney
10
adipocyte
10
heart left ventricle
10
pancreas
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
10
spleen
9
EndoC_BH1
9
GM12878
9
left kidney
9
psoas muscle
8
H9
8
sigmoid colon
7
MCF-7
7
embryonic stem cell
7
islet of Langerhans
7
lymphocyte
7
ovary
6
SGBS preadipocytes
6
coronary artery
6
dendritic cell
6
gastrocnemius medialis
6
heart right ventricle
6
retinal pigment epithelial cell
6
thyroid gland
6
tibial nerve
6
transverse colon
5
HUES8
5
HepG2
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
mesenchymal stem cell
5
muscle of trunk
5
right atrium auricular region
5
tibial artery
4
Ammon's horn
4
CyT49
4
Peyer's patch
4
aorta
4
breast epithelium
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
frontal cortex
4
iPSC derived cell line
4
mesendoderm
4
testis
4
trophoblast
4
upper lobe of left lung
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
ascending aorta
3
bipolar neuron
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
left renal cortex interstitium
3
limb
3
medulla oblongata
3
midbrain
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
right renal cortex interstitium
3
skeletal muscle tissue
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
urinary bladder
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM19238
2
GM19239
2
GM23248
2
H4
2
HCT-116 cell
2
HEK293
2
HL-60
2
HUES6
2
HuH-7
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
M059J
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
2
NCCIT cell
2
NCI-H226 cell
2
NT2-D1 cell
2
PC-3
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SW480
2
T47D
2
THP-1
2
WERI-Rb-1
2
adipose-derived stem cell
2
angular gyrus
2
cardiac muscle cell
2
cerebellar cortex
2
cingulate gyrus
2
colonic mucosa
2
differentiating adipose-derived stem cell
2
duodenal mucosa
2
embryonic facial prominence
2
endodermal cell
2
fibroblast cell line
2
fibroblast of cardiac tissue
2
iPS DF 19.11
2
iPS DF 4.7 Cell Line
2
inferior parietal cortex
2
left cardiac atrium
Disease term
5
breast cancer
Organ
7
mammary gland
Life stage
5
adult
Date released
5
September, 2022
1
June, 2020
1
May, 2021
Software used
5
r
1
abc
1
macs
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_type!
primary cell
organ_slims!
adipose tissue
ureter
Showing 7 of 7 results
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Download
FileSet
DSR208VEV
released
Annotation file set
: Target gene predictions for BSS01244 MCF-7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR811JFD
released
Annotation file set
: Target gene predictions for BSS01243 MCF-7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR701UHJ
released
Annotation file set
: Target gene predictions for BSS01240 MCF-7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR432GFP
released
Annotation file set
: Target gene predictions for BSS01235 MCF-7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR131CPD
released
Annotation file set
: Target gene predictions for BSS01226 MCF-7 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR249DLQ
released
Annotation file set
: enhancer-gene predicton of MCF-7-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR645VUL
released
Annotation file set
: Accessible chromatin annotation for Breast MCF-7 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP