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Schema
Citing CMDGA
Clear Filters
Annotation type
7
accessible chromatin
5
chromatin state
3
binding sites
3
histone modifications
1
target gene predictions
Annotation Category
7
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ATAC-seq
1
DNase-seq
1
pCHi-C
Available data
7
bed bed3+
File set status
8
released
Genome assembly (visualization)
7
hg19
Organism
8
Homo sapiens
Biosample type
primary cell
8
in vitro differentiated cells
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
20
A549
20
pigmented layer of retina
19
HFFc6
18
adrenal gland
18
brain
18
small intestine
17
lung
17
muscle of arm
16
muscle of leg
16
placenta
15
large intestine
15
neural progenitor cell
15
thymus
14
liver
13
left lung
13
muscle of back
12
right lung
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
adipocyte
10
adipose tissue
10
heart left ventricle
10
pancreas
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
10
spleen
9
EndoC_BH1
9
GM12878
9
left kidney
9
psoas muscle
8
H9
8
sigmoid colon
7
MCF-7
7
embryonic stem cell
7
islet of Langerhans
7
lymphocyte
7
ovary
6
SGBS preadipocytes
6
coronary artery
6
dendritic cell
6
gastrocnemius medialis
6
heart right ventricle
6
retinal pigment epithelial cell
6
thyroid gland
6
tibial nerve
6
transverse colon
5
HUES8
5
HepG2
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
mesenchymal stem cell
5
muscle of trunk
5
right atrium auricular region
5
tibial artery
4
Ammon's horn
4
CyT49
4
Peyer's patch
4
aorta
4
breast epithelium
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
frontal cortex
4
iPSC derived cell line
4
mesendoderm
4
omental fat pad
4
testis
4
trophoblast
4
upper lobe of left lung
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
ascending aorta
3
bipolar neuron
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
midbrain
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
urinary bladder
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM19238
2
GM19239
2
GM23248
2
H4
2
HCT-116 cell
2
HEK293
2
HL-60
2
HUES6
2
HuH-7
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
M059J
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
2
NCCIT cell
2
NCI-H226 cell
2
NT2-D1 cell
2
PC-3
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SW480
2
T47D
2
THP-1
2
WERI-Rb-1
2
adipose-derived stem cell
2
angular gyrus
2
cardiac muscle cell
2
cerebellar cortex
2
cingulate gyrus
2
colonic mucosa
2
differentiating adipose-derived stem cell
2
duodenal mucosa
2
embryonic facial prominence
2
endodermal cell
2
fibroblast cell line
Date released
5
May, 2021
1
June, 2020
1
March, 2020
1
November, 2022
Software used
7
macs
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
8
AMP
RFA
7
AMP
1
AMP2
biosample_term_name!
kidney tubule cell
biosample_type!
primary cell
Showing 8 of 8 results
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR989QBA
released
Annotation file set
: Accessible chromatin annotation for Blood CD3+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP