Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
2
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
2
DNase-seq
2
snATAC-seq
1
ATAC-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
22
endothelial cell
20
fibroblast
20
monocyte
20
pericyte cell
19
CD14-positive monocyte
16
B cell
15
macrophage
15
smooth muscle cell
14
common myeloid progenitor, CD34-positive
12
astrocyte
12
excitatory neuron
11
hepatocyte
11
pancreatic beta cell
10
T cell
10
pancreatic alpha cell
9
CD4-positive, alpha-beta memory T cell
9
CD8-positive, alpha-beta T cell
9
pancreatic acinar cell
9
pancreatic delta cell
9
pancreatic ductal cell
9
regulatory T cell
8
glutamatergic neuron
8
natural killer cell
7
CD8-positive, alpha-beta memory T cell
7
erythroblast
7
keratinocyte
7
osteoblast
7
skeletal muscle satellite cell
6
T-helper 1 cell
6
colon epithelial cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast of cardiac tissue
6
memory B cell
6
mononuclear cell
6
olfactory receptor cell
6
trophoblast cell
6
type II pneumocyte
5
T-helper 17 cell
5
T-helper 2 cell
5
cortical cell of adrenal gland
5
gabaergic neuron
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
skeletal muscle fiber
5
skin fibroblast
4
CD4-positive, alpha-beta T cell
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
hepatic stellate cell
4
kidney tubule cell
4
megakaryocyte
4
retinal pigment epithelial cell
4
skeletal muscle myoblast
4
smooth muscle cell of the esophagus
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
3
cardiac fibroblast
3
CD4-positive helper T cell
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
bronchial epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
epithelial cell of prostate
3
foreskin fibroblast
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
kidney glomerular epithelial cell
3
mesothelial cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
plasma cell
3
plasmacytoid dendritic cell
3
renal cortical epithelial cell
3
schwann cell
3
type B pancreatic cell
2
CD1c-positive myeloid dendritic cell
2
Muller cell
2
T follicular helper cell
2
T-cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipocyte
2
alveolar macrophage
2
aortic endothelial cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell of epidermis
2
bone marrow cell
2
brain microvascular endothelial cell
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
colon goblet cell
2
conventional dendritic cell
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of proximal tubule
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
iris pigment epithelial cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
leukocyte
2
luteal cell
2
mammary epithelial cell
2
mast cell
2
mature NK T cell
2
mature natural killer cell
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
microglial cell
2
myoepithelial cell
2
myoepithelial cell of mammary gland
2
naive regulatory T cell
2
naive t cell
2
natural killer cell mediated cytotoxicity
2
neuron
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
non-pigmented ciliary epithelial cell
2
paneth cell
2
parietal cell
2
peptic cell
2
pulmonary artery endothelial cell
2
regular atrial cardiac myocyte
2
respiratory goblet cell
2
skeletal muscle cell
2
skeletal muscle fibroblast
2
small intestine goblet cell
2
smooth muscle cell of the brain vasculature
2
stellate neuron
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-lymphocyte
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
aortic adventitial fibroblast
1
astrocyte of the spinal cord
1
brain pericyte
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
Organ
3
bronchus
3
epithelium
Date released
2
June, 2020
2
November, 2021
1
April, 2020
Software used
3
macs
1
abc
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
2
AMP
2
ENCODE
1
LungMap
RFA
2
AMP
2
ENCODE3
1
LungMap2
biosample_term_name!
dermis blood vessel endothelial cell
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR848VTY
released
Annotation file set
: ATAC-seq peaks in club cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR905LLL
released
Annotation file set
: Target gene predictions of Club Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR678WWH
released
Annotation file set
: Accessible chromatin annotation of Club Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR022XKZ
released
Annotation file set
: Accessible chromatin annotation for Blood CD34+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR921QGE
released
Annotation file set
: Accessible chromatin annotation for Blood CD34+ cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP