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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
2
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ATAC-seq
2
DNase-seq
2
snATAC-seq
1
ChIP-seq
Available data
7
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
Biosample term
54
HeLa-S3
39
H1-hESC
26
retina
25
heart
24
kidney
23
K562
22
endothelial cell
22
stomach
20
fibroblast
20
pigmented layer of retina
19
A549
19
HFFc6
19
pericyte cell
18
brain
17
lung
17
muscle of arm
17
small intestine
16
adrenal gland
16
macrophage
15
B cell
15
muscle of leg
15
neural progenitor cell
15
placenta
15
smooth muscle cell
14
large intestine
14
thymus
13
left lung
13
liver
13
muscle of back
12
excitatory neuron
12
right lung
11
renal pelvis
11
right kidney
10
T cell
10
astrocyte
10
common myeloid progenitor, CD34-positive
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
hepatocyte
10
pancreatic beta cell
10
pancreatic ductal cell
10
renal cortex interstitium
9
adipose tissue
9
left kidney
9
pancreas
9
pancreatic acinar cell
9
pancreatic alpha cell
9
retinal pigment epithelial cell
9
spinal cord
9
spleen
8
CD8-positive, alpha-beta T cell
GM12878
8
glutamatergic neuron
8
natural killer cell
8
pancreatic delta cell
8
psoas muscle
8
regulatory T cell
7
H9
7
adipocyte
7
fibroblast of cardiac tissue
7
islet of Langerhans
7
lymphocyte
7
monocyte
7
sigmoid colon
6
MCF-7
6
SGBS preadipocytes
6
colon epithelial cell
6
endothelial cell of hepatic sinusoid
6
erythroblast
6
heart right ventricle
6
memory B cell
6
olfactory receptor cell
6
ovary
6
skeletal muscle satellite cell
6
skin fibroblast
6
tibial nerve
6
trophoblast cell
6
type II pneumocyte
5
CD8-positive, alpha-beta memory T cell
5
HUES8
5
T-helper 1 cell
5
caudate nucleus
5
chondrocyte
5
coronary artery
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
foreskin keratinocyte
5
gabaergic neuron
5
gastrocnemius medialis
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
mononuclear cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle fiber
5
thyroid gland
5
tibial artery
5
transverse colon
4
Ammon's horn
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Peyer's patch
4
T-helper 2 cell
4
aorta
4
blood vessel smooth muscle cell
4
body of pancreas
4
chorionic villus
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iPSC derived cell line
4
keratinocyte
4
kidney tubule cell
4
megakaryocyte
4
muscle of trunk
4
omental fat pad
4
smooth muscle cell of the esophagus
4
testis
4
trophoblast
4
type I pneumocyte
4
upper lobe of left lung
3
CD14-positive monocyte
3
CD4-positive, alpha-beta memory T cell
3
GM18507
3
GM19240
3
HCT116
3
NAMALWA cell
3
SK-N-DZ
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
breast epithelium
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
ciliated cell
3
club cell
3
endocardial cell
3
endocrine pancreas
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
foreskin fibroblast
3
globus pallidus
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesendoderm
3
mesothelial cell
3
midbrain
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
osteoblast
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
plasmacytoid dendritic cell
3
pons
3
prostate gland
3
putamen
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle myoblast
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
type B pancreatic cell
3
type I muscle cell
3
type II muscle cell
3
urinary bladder
2
cardiac fibroblast
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
Organ
7
connective tissue
Life stage
1
adult
unknown
Date released
May, 2021
2
February, 2024
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
1
September, 2022
Software used
6
macs
1
r
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
6
AMP
1
ENCODE
RFA
5
AMP
1
AMP2
1
ENCODE3
biosample_term_name!
GM12878
month_released!
May, 2021
relevant_life_stage!
unknown
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP