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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
55
HeLa-S3
40
H1-hESC
24
K562
22
endothelial cell
21
monocyte
20
A549
20
fibroblast
20
pericyte cell
19
CD14-positive monocyte
19
HFFc6
18
B cell
17
macrophage
16
smooth muscle cell
15
neural progenitor cell
14
common myeloid progenitor, CD34-positive
13
excitatory neuron
12
adipocyte
12
astrocyte
12
hepatocyte
11
T cell
11
hematopoietic multipotent progenitor cell
11
pancreatic beta cell
10
CD8-positive, alpha-beta T cell
10
pancreatic alpha cell
10
pituitary stalk
10
retinal pigment epithelial cell
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
GM12878
9
natural killer cell
9
pancreatic acinar cell
9
pancreatic delta cell
9
pancreatic ductal cell
9
regulatory T cell
8
H9
8
fibroblast of cardiac tissue
8
glutamatergic neuron
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
colon epithelial cell
7
embryonic stem cell
7
erythroblast
7
keratinocyte
7
lymphocyte
7
mesenchymal stem cell
7
osteoblast
7
skeletal muscle satellite cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
dendritic cell
6
mammary gland epithelial cell
6
memory B cell
6
mononuclear cell
6
olfactory receptor cell
6
skin fibroblast
6
type II pneumocyte
5
HUES8
5
HepG2
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
cortical cell of adrenal gland
5
foreskin keratinocyte
5
gabaergic neuron
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
skeletal muscle fiber
5
skeletal muscle myoblast
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
blood vessel smooth muscle cell
4
cardiac muscle cell
4
enteric smooth muscle cell
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iPSC derived cell line
4
kidney tubule cell
4
megakaryocyte
4
mesendoderm
4
smooth muscle cell of the esophagus
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
bipolar neuron
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
ciliated cell
3
club cell
3
endocardial cell
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
mesothelial cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
neutrophil
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
plasma cell
3
plasmacytoid dendritic cell
3
renal cortical epithelial cell
3
schwann cell
3
type B pancreatic cell
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM19238
2
GM19239
2
GM23248
2
H4
2
HCT-116 cell
2
HEK293
2
HL-60
2
HUES6
2
HuH-7
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
M059J
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
2
Muller cell
2
NCCIT cell
2
NCI-H226 cell
2
NT2-D1 cell
2
PC-3
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SW480
2
T follicular helper cell
Date released
4
November, 2021
Software used
2
abc
2
macs
Lab
4
Bing Ren, UCSD
Project
4
ENCODE
RFA
4
ENCODE3
biosample_type!
tissue
organ_slims!
vasculature
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR355QJQ
released
Annotation file set
: Target gene predictions of Vascular Smooth Muscle 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR962GMB
released
Annotation file set
: Target gene predictions of Vascular Smooth Muscle 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR041TBN
released
Annotation file set
: Accessible chromatin annotation of Vascular Smooth Muscle 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR564ZHK
released
Annotation file set
: Accessible chromatin annotation of Vascular Smooth Muscle 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE