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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
3
snATAC-seq
2
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
3
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
cell line
Biosample term
22
endothelial cell
20
fibroblast
19
pericyte cell
15
CD14-positive monocyte
15
macrophage
14
smooth muscle cell
12
excitatory neuron
10
astrocyte
10
pituitary stalk
9
pancreatic acinar cell
9
pancreatic ductal cell
8
hepatocyte
8
pancreatic alpha cell
8
pancreatic beta cell
8
pancreatic delta cell
7
kidney
6
CD8-positive, alpha-beta T cell
6
T cell
6
adipocyte
6
colon epithelial cell
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
erythroblast
6
type II pneumocyte
5
B cell
5
cortical cell of adrenal gland
5
inhibitory neuron
5
keratinocyte
5
pancreatic stellate cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
luminal epithelial cell of mammary gland
4
memory B cell
4
natural killer cell
4
pancreatic A cell
4
smooth muscle cell of the esophagus
4
type B pancreatic cell
4
type I pneumocyte
3
CD4-positive helper T cell
3
basal cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
megakaryocyte
3
mesothelial cell
3
monocyte
3
oligodendrocyte precursor cell
3
pancreatic polypeptide-secreting cell
3
schwann cell
3
type I muscle cell
3
type II muscle cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
Jurkat
2
MCF 10A cell
2
Muller cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
glial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
liver
2
luteal cell
2
mammary gland epithelial cell
2
mast cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
mesenchymal stem cell
2
microglial cell
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
trophoblast cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
Schwann cell
1
adipose tissue
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac muscle cell
1
cardiac ventricle
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of umbilical vein
1
enteroendocrine cell
1
epithelial cell of prostate
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastric goblet cell
1
gastrocnemius medialis
1
glomerular visceral epithelial cell
1
goblet cell
1
hepatic stellate cell
1
hepatoblast
1
iPS DF 19.11
1
induced pluripotent stem cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
large intestine
1
leukocyte
1
lung neuroendocrine cell
Organ
2
epithelium
1
kidney
Life stage
1
adult
Date released
2
January, 2021
1
August, 2021
1
May, 2021
1
November, 2021
Software used
3
macs
1
abc
1
cicero
Lab
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Katalin Susztak, Upenn
Project
2
AMP
2
T1D
1
ENCODE
RFA
2
T1D
1
AMP
1
AMP2
1
ENCODE3
lab.title!
AMP-T2D consortium
Showing 5 of 5 results
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Download
FileSet
DSR812RPT
released
Annotation file set
: Accessible chromatin annotation of Fetal Cholangiocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR884VIR
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Podocytes
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR234HXR
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D