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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
3
Fine-mapped variants
3
target gene predictions
2
accessible chromatin
2
chromatin state
2
eQTL
2
gene expression
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
2
ATAC-seq
2
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
primary cell
4
tissue
1
cell line
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
20
A549
20
pigmented layer of retina
19
HFFc6
18
adrenal gland
18
brain
18
small intestine
17
lung
17
muscle of arm
16
muscle of leg
16
placenta
15
large intestine
15
neural progenitor cell
15
thymus
14
liver
13
left lung
13
muscle of back
12
right lung
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
adipocyte
10
adipose tissue
10
heart left ventricle
10
pancreas
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
10
spleen
9
EndoC_BH1
9
GM12878
9
left kidney
9
psoas muscle
8
H9
8
sigmoid colon
7
MCF-7
7
embryonic stem cell
7
islet of Langerhans
7
lymphocyte
7
ovary
6
SGBS preadipocytes
6
coronary artery
6
dendritic cell
6
gastrocnemius medialis
6
heart right ventricle
6
retinal pigment epithelial cell
6
thyroid gland
6
tibial nerve
6
transverse colon
5
HUES8
5
HepG2
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
mesenchymal stem cell
5
muscle of trunk
5
right atrium auricular region
5
tibial artery
4
Ammon's horn
4
CyT49
4
Peyer's patch
4
aorta
4
breast epithelium
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
frontal cortex
4
iPSC derived cell line
4
mesendoderm
4
omental fat pad
4
testis
4
trophoblast
4
upper lobe of left lung
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
ascending aorta
3
bipolar neuron
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
midbrain
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
urinary bladder
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM19238
2
GM19239
2
GM23248
2
H4
2
HCT-116 cell
2
HEK293
2
HL-60
2
HUES6
2
HuH-7
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
M059J
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
2
NCCIT cell
2
NCI-H226 cell
2
NT2-D1 cell
2
PC-3
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SW480
2
T47D
2
THP-1
2
WERI-Rb-1
2
adipose-derived stem cell
2
angular gyrus
2
cardiac muscle cell
2
cerebellar cortex
2
cingulate gyrus
2
colonic mucosa
2
differentiating adipose-derived stem cell
2
duodenal mucosa
2
embryonic facial prominence
2
endodermal cell
2
fibroblast cell line
Organ
4
adipose tissue
4
connective tissue
Life stage
4
adult
Date released
2
September, 2022
1
January, 2020
1
May, 2021
1
September, 2018
Software used
2
macs
2
r
1
abc
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_type!
primary cell
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR907MAG
released
Annotation file set
: Target gene predictions for BSS01394 omental fat pad from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR638JIJ
released
Annotation file set
: Target gene predictions for BSS01393 omental fat pad from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR809PGU
released
Annotation file set
: Accessible chromatin annotation of adipose omental fat pad from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR419KCH
released
Annotation file set
: ATAC-seq sites in omental fat pad for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP