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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
3
binding sites
2
histone modifications
1
gene expression
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ATAC-seq
1
pCHi-C
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
23
endothelial cell
21
monocyte
20
A549
20
fibroblast
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
18
B cell
18
adrenal gland
18
brain
18
small intestine
17
lung
17
macrophage
17
muscle of arm
16
muscle of leg
16
placenta
16
smooth muscle cell
15
large intestine
15
neural progenitor cell
15
thymus
14
common myeloid progenitor, CD34-positive
14
liver
13
excitatory neuron
13
left lung
13
muscle of back
12
adipocyte
12
astrocyte
12
hepatocyte
12
right lung
11
T cell
11
hematopoietic multipotent progenitor cell
11
pancreatic beta cell
11
pancreatic ductal cell
11
renal pelvis
11
right kidney
10
CD8-positive, alpha-beta T cell
10
adipose tissue
10
heart left ventricle
10
pancreas
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pituitary stalk
10
renal cortex interstitium
10
retinal pigment epithelial cell
spinal cord
10
spleen
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
GM12878
9
left kidney
9
natural killer cell
9
pancreatic delta cell
9
psoas muscle
9
regulatory T cell
8
H9
8
fibroblast of cardiac tissue
8
glutamatergic neuron
islet of Langerhans
8
sigmoid colon
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
colon epithelial cell
7
embryonic stem cell
7
erythroblast
7
keratinocyte
7
lymphocyte
7
mesenchymal stem cell
7
osteoblast
7
ovary
7
skeletal muscle satellite cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
coronary artery
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
gastrocnemius medialis
6
heart right ventricle
6
mammary gland epithelial cell
6
memory B cell
6
mononuclear cell
6
olfactory receptor cell
6
skin fibroblast
6
thyroid gland
6
tibial nerve
6
transverse colon
6
type II pneumocyte
5
HUES8
5
HepG2
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
cortical cell of adrenal gland
5
foreskin keratinocyte
5
gabaergic neuron
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
muscle of trunk
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle fiber
5
skeletal muscle myoblast
5
tibial artery
4
Ammon's horn
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
Peyer's patch
4
aorta
4
blood vessel smooth muscle cell
4
breast epithelium
4
cardiac muscle cell
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iPSC derived cell line
4
kidney tubule cell
4
megakaryocyte
4
mesendoderm
4
omental fat pad
4
pancreatic A cell
4
smooth muscle cell of the esophagus
4
testis
4
trophoblast
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
4
upper lobe of left lung
3
cardiac fibroblast
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
bipolar neuron
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesothelial cell
3
midbrain
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
Date released
5
May, 2021
1
March, 2020
1
November, 2022
Software used
6
macs
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
frontal cortex
islet of Langerhans
spinal cord
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP