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Schema
Citing CMDGA
Clear Filters
Annotation type
10
gene expression
5
accessible chromatin
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
1
histone modifications
1
target gene predictions
Annotation Category
5
cis-regulatory elements
1
Target gene links
Annotation type Category
5
snATAC-seq
1
ATAC-seq
Available data
6
bed bed3+
3
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
tissue
Biosample term
55
HeLa-S3
40
H1-hESC
24
K562
21
monocyte
20
A549
19
CD14-positive monocyte
19
HFFc6
15
B cell
15
neural progenitor cell
14
common myeloid progenitor, CD34-positive
11
adipocyte
11
hematopoietic multipotent progenitor cell
10
hepatocyte
10
pituitary stalk
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
GM12878
9
natural killer cell
9
pancreatic beta cell
9
regulatory T cell
9
retinal pigment epithelial cell
8
CD8-positive, alpha-beta T cell
8
H9
8
pancreatic alpha cell
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
T cell
7
embryonic stem cell
7
lymphocyte
7
macrophage
7
mesenchymal stem cell
7
osteoblast
7
pancreatic delta cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
dendritic cell
6
endothelial cell
6
endothelial cell of umbilical vein
6
mononuclear cell
6
olfactory receptor cell
6
pancreatic ductal cell
5
HUES8
5
HepG2
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic acinar cell
5
skeletal muscle myoblast
4
CD4-positive helper T cell
4
CyT49
4
cardiac muscle cell
4
endothelial cell of hepatic sinusoid
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
glomerular visceral epithelial cell
glutamatergic neuron
4
iPSC derived cell line
4
kidney tubule cell
4
mammary gland epithelial cell
4
memory B cell
4
mesendoderm
4
skin fibroblast
4
smooth muscle cell
3
cardiac fibroblast
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
activated CD4-positive, alpha-beta T cell
3
astrocyte
3
bipolar neuron
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
choroid plexus epithelial cell
3
endometrium adenocarcinoma
3
glomerular endothelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney glomerular epithelial cell
3
megakaryocyte
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
plasmacytoid dendritic cell
3
renal cortical epithelial cell
3
skeletal muscle satellite cell
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
CD1c-positive myeloid dendritic cell
2
CD4-positive, alpha-beta T cell
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM19238
2
GM19239
2
GM23248
2
H4
2
HCT-116 cell
2
HEK293
2
HL-60
2
HUES6
2
HuH-7
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
M059J
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
2
NCCIT cell
2
NCI-H226 cell
2
NT2-D1 cell
2
PC-3
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SW480
2
T follicular helper cell
2
T-cell
2
T47D
2
THP-1
2
WERI-Rb-1
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
bone marrow cell
2
brain microvascular endothelial cell
2
brain pericyte
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
conventional dendritic cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endodermal cell
2
epithelial cell of proximal tubule
2
erythroblast
2
erythroid cell
2
extracellular matrix secreting cell
2
fibroblast
Organ
6
epithelium
Life stage
2
adult
1
unknown
Date released
November, 2021
2
January, 2021
2
May, 2022
1
August, 2021
1
February, 2024
Software used
5
macs
1
cicero
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
4
AMP
2
T1D
RFA
3
AMP2
2
T1D
1
AMP
biosample_term_name!
glutamatergic neuron
biosample_type!
tissue
month_released!
November, 2021
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D